Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4895g00035 ATGGGCCTTGCCCGGTTATTACTGGTAATCATATTCGGTATTGCCGCCGCATCATGGGCGGTGGTGGATGGTCAGCGAGAGGCGAGGTTCAAATGCAGCTCGCAAGGTAAAACGTGTCGTTCTCTGGTGGATTATTTGTCCCCAAATGAAACCACCTTAGGCCACATTCAAAAGCTCTTCAACTTGAAGCACGTTCTGGACATAGTGGGCGCTAACGCCCTCCCCTCCACCACCCGAGGCAACCGCACCGTTAAAAAGGGCGAAATTATCAAAATCCCCTTTCAGTGCATGTGCTCCAACGGCACCGGCTTGTCCAACAAGACGCCTCGCTACACCATCCAGAAAGGCGACACGCTTTCCCACATAGCCATGGAAGTGTTCTCGCGTTTGGTCACTTACCCACAACTCCAAACGCTCAACAACATACCGGACCCTACAAAGATTCAGCCCGGCCAGAAGGTGTGGATCCCTCTCCCTTGCAGCTGCGATCAGGTGGCCGGCACCGATGCCGTCCATTATGGATATGTGGTGGCTACGGGAAACTCCTTTCCGCAGATTGCTCAACAATACGGCACCACCCTGGACACCCTTCTCGACCTCAACGGCATTTCTGATCCCAAGTCCCTTCAAGCCGGTCAAATCATCGATGTTCCCCTCAAAGCATGCTCCTCATCGGTGAAAAATGACTCCTTGGACTATCCTCTGCTCGTTGCAAATGGTACCGACACCTACACAGCCAATGGCTGCGTCAAGTGCAGCTGTAACTCCGCCGCCAACAACGCCACATTACAATGCGAGCCATCGCAAGTCAAACCATATAGATGGGGTAAATGCCCAGCCATGCTTTGCGGAAGTTCAACCATTGGCAACATCACTTCTACAAGTACCTGCACTCGCACCATCTGTGCTTACGATGGTTATAACAACAACCGAACTATAGCCACCGCTCTTGTCAACGAGTCCACTTGTCCTGCTCCAACAGAATCGGGAGCATCCAGGATCAGCTTCCAGGGCTGGGGTTGGAATCATCTTTTCACGGCCCTTCACTTTATCTGCTTTTGTGTCTGTCTTTTGCAGTGA 1080 0.5213 MGLARLLLVIIFGIAAASWAVVDGQREARFKCSSQGKTCRSLVDYLSPNETTLGHIQKLFNLKHVLDIVGANALPSTTRGNRTVKKGEIIKIPFQCMCSNGTGLSNKTPRYTIQKGDTLSHIAMEVFSRLVTYPQLQTLNNIPDPTKIQPGQKVWIPLPCSCDQVAGTDAVHYGYVVATGNSFPQIAQQYGTTLDTLLDLNGISDPKSLQAGQIIDVPLKACSSSVKNDSLDYPLLVANGTDTYTANGCVKCSCNSAANNATLQCEPSQVKPYRWGKCPAMLCGSSTIGNITSTSTCTRTICAYDGYNNNRTIATALVNESTCPAPTESGASRISFQGWGWNHLFTALHFICFCVCLLQ 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4895g00035 359 CDD LysM 111 156 IPR018392 -
Pral4895g00035 359 ProSiteProfiles LysM domain profile. 109 156 IPR018392 -
Pral4895g00035 359 Gene3D LysM domain 105 165 IPR036779 -
Pral4895g00035 359 SMART LysM_2 174 218 IPR018392 -
Pral4895g00035 359 SMART LysM_2 110 157 IPR018392 -
Pral4895g00035 359 SUPERFAMILY LysM domain 174 218 IPR036779 -
Pral4895g00035 359 Gene3D LysM domain 166 229 IPR036779 -
Pral4895g00035 359 Pfam LysM domain 111 157 IPR018392 -
Pral4895g00035 359 Pfam LysM domain 175 218 IPR018392 -
Pral4895g00035 359 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 6 326 - -
Pral4895g00035 359 ProSiteProfiles LysM domain profile. 173 217 IPR018392 -
Pral4895g00035 359 SUPERFAMILY LysM domain 110 158 IPR036779 -
Pral4895g00035 359 CDD LysM 175 217 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4895g00035 Pral-Chr4895 230838 232475 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4895g00035 14 316 LysM Receptor-like Protein (LYPs) Gene Family AT2G17120 46.382 3.11e-89 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4895g00035 - - lang:109351135 360.147