Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4840g00041 ATGTCGGCCAATCATCCCGGTTTTATACTCTTCGGCCAAAAGATGTCCTCCTCGTCGGGATCTCCTACTCCGGCCGCCCCTTCTCTGATTCCATCTAACTCTCCTCCCGAGCATGATTGGAGTAGCTCAAACAAAGCAGAAGTGGGAACGCCTTCTACCGAAAGCTCCGAACACCAAAATGTGCAGAAAAATGAGCCAACGAAGATAAGCAGTTCAGAAGAATTTAAAATGATGAAGAAACCAGACAAGATTCAACAGTGTCCACGATGCAACAGTATGGATACAAAGTTCTGTTATTTCAATAACTACAACGTGAATCAACCTCGACATTTCTGCAAGAGCTGCCACAGATATTGGACTGCCGGCGGAGCAATGAGAAATGTCCCAGTTGGTGCTGGAAGACGAAGGAACAGGCAACTGTCCTCGCCATACCATCGCCACACTACAGTATCCTCCGAAGGCATTCCAGTTGCAAACTCAAAGACAGACTCATCTTCTCACCAGTGTTTCTCAACTCTTGAATCCTCATCTGCTTTCAAGTCAGCACCCCCAGATAATACTAGTACCGTGTTGAGATTTGGTCCAGACGCCCCTGTTTCTGATTCTGGGAGTTCAATTCTCAATCTTGGAAATTGGGAGGAGGCATCCGGGTGTGGATCTTCTGTGACCAATGCGAGTGGGGCAGGGGAAATGAAGTATCAGAACTTGCTATGCAATGGAACAGAAATGTGTCCAATCTGA 741 0.4696 MSANHPGFILFGQKMSSSSGSPTPAAPSLIPSNSPPEHDWSSSNKAEVGTPSTESSEHQNVQKNEPTKISSSEEFKMMKKPDKIQQCPRCNSMDTKFCYFNNYNVNQPRHFCKSCHRYWTAGGAMRNVPVGAGRRRNRQLSSPYHRHTTVSSEGIPVANSKTDSSSHQCFSTLESSSAFKSAPPDNTSTVLRFGPDAPVSDSGSSILNLGNWEEASGCGSSVTNASGAGEMKYQNLLCNGTEMCPI 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4840g00041 246 ProSitePatterns Zinc finger Dof-type signature. 87 123 IPR003851 GO:0003677|GO:0006355
Pral4840g00041 246 MobiDBLite consensus disorder prediction 34 68 - -
Pral4840g00041 246 MobiDBLite consensus disorder prediction 11 27 - -
Pral4840g00041 246 ProSiteProfiles Zinc finger Dof-type profile. 85 139 IPR003851 GO:0003677|GO:0006355
Pral4840g00041 246 Pfam Dof domain, zinc finger 82 139 IPR003851 GO:0003677|GO:0006355
Pral4840g00041 246 MobiDBLite consensus disorder prediction 1 80 - -
Pral4840g00041 246 PANTHER CYCLIC DOF FACTOR 2 3 216 IPR045174 GO:0003700|GO:0006355
Pral4840g00041 246 MobiDBLite consensus disorder prediction 136 163 - -
Pral4840g00041 246 MobiDBLite consensus disorder prediction 143 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4840g00041 Pral-Chr4840 190326 192847 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4840g00041 53 209 C2C2-Dof Transcription Factor Family AT5G39660 46.835 2.65e-40 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pral4840g00041 zf-Dof 1.9e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4840g00041 - - pcin:129288604 360.147