Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3127g00003 ATGGTCTACTCTTCTCTTCCAATCTATCACCTAGATCCACCACCCAACTGGCATCACCAGCTTGATCAGCAGCCAGAAGGGTTTATTCATGCCCAGAATTCCCCGGTTCCGCCTTCACCTCCGCCACCACCGCCTCCACCTGTCGGAGACGGTGATTGTGGTGGCAACAAAGGCTCGACCACGAGGCCAGGATCCATGGCGGATCGAGCTCGGCTAGCGAAGGTAGCACAGCCAGAAACAGCACTGAAATGTCCGCGGTGTGAATCCACCAACACCAAGTTCTGTTACTACAACAATTACAGCCTCTCTCAGCCCCGCCATTTCTGCAAGACTTGCCGGCGATACTGGACCCGAGGCGGCTCGTTGAGGAACGTGCCGGTGGGAGGAGGTTGCAGAAGGAAGAACAAAAGAAGCAAAGGAGCTAACATCAGGTCATCAAAATCTCCCAACAACAAAGTAGCATCTACATCAGGTTCCATTATTTCCAACTCTTCTGCAAGTGCAAATAATTCCTCAAGTAACTGTTGCCCTAATAGCGATCATCATCATCATCATAACTTGATAGGTCATCGCTTACCGCCTCCATTTCTCTTCCCTCCTCCTACATCTCATAGTTACAGTGACTACGACGTCGTTTTTGGGGCAACAAACATCAAACATGCTGATGAATTTCAAATTGCTTGTAATAATAATTCTACTAGCTCAGGTGGTATAATTGGAAATAATAATAACAACAATGGCTTTGTTACTACTGAGCAATGGAAGCTACCAAGTCTTCTGCAGCATCATCAACAGTTTCCAGCAGCAACATTCTTGAGTAATTTGGAGGCACCAGTAGGGTTATATCAGTTTGAAAGATCAGAGAACGTTGAGATCCAACCTTCAAGGACATTATTATATTCTGGTGCTACTACAGTTAAAATGGAGGAAAATATGGATCAAGTTGTGGGTTTATCCAAGAATCTTACGGGAAACTCAGAAAATAATAATCAACAATTCTGGCAAGCAAATAATGGCAGCAGCGCATGGAAAAGCAACAATGTTTCTATTAGTTTTGCTTCTTCTTCCACCAACCATCTCCTGTGA 1086 0.4512 MVYSSLPIYHLDPPPNWHHQLDQQPEGFIHAQNSPVPPSPPPPPPPPVGDGDCGGNKGSTTRPGSMADRARLAKVAQPETALKCPRCESTNTKFCYYNNYSLSQPRHFCKTCRRYWTRGGSLRNVPVGGGCRRKNKRSKGANIRSSKSPNNKVASTSGSIISNSSASANNSSSNCCPNSDHHHHHNLIGHRLPPPFLFPPPTSHSYSDYDVVFGATNIKHADEFQIACNNNSTSSGGIIGNNNNNNGFVTTEQWKLPSLLQHHQQFPAATFLSNLEAPVGLYQFERSENVEIQPSRTLLYSGATTVKMEENMDQVVGLSKNLTGNSENNNQQFWQANNGSSAWKSNNVSISFASSSTNHLL 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3127g00003 361 ProSiteProfiles Zinc finger Dof-type profile. 82 136 IPR003851 GO:0003677|GO:0006355
Pral3127g00003 361 ProSitePatterns Zinc finger Dof-type signature. 84 120 IPR003851 GO:0003677|GO:0006355
Pral3127g00003 361 MobiDBLite consensus disorder prediction 13 67 - -
Pral3127g00003 361 MobiDBLite consensus disorder prediction 34 50 - -
Pral3127g00003 361 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 70 279 IPR045174 GO:0003700|GO:0006355
Pral3127g00003 361 Pfam Dof domain, zinc finger 81 136 IPR003851 GO:0003677|GO:0006355
Pral3127g00003 361 MobiDBLite consensus disorder prediction 142 166 - -
Pral3127g00003 361 MobiDBLite consensus disorder prediction 126 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3127g00003 Pral-Chr3127 200827 202824 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3127g00003 62 139 C2C2-Dof Transcription Factor Family AT2G37590 84.615 1.31e-42 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pral3127g00003 zf-Dof 5.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3127g00003 - - pcin:129293462 442.58