Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2447g00001 ATGATGTCACAGGAAAATAATTCTCCTTCAAAGGAGGCAGCAGCGAAAGAAGATGGTAGCCCAAGCTCCGGCGGCCGGAAAAACGCATCTGCGAGGCCACCAGAGCAAGGTCTCAAGTGTCCGAGGTGTGACTCGCCCAACACCAAATTCTGTTACTACAACAATTACAGTCTGACGCAGCCAAGGCACTTCTGCAAGACATGCCGCAGGTACTGGACCAAGGGTGGAGCCCTACGCAACGTTCCGATTGGTGGAGGCTGCAGGAAGAACAAGAAGGTGAAGTCGTCGTCTTCACGGCTCTCCGGCGACCCCAAGGACCCCGGATTCCCGGGGGAACTTAGTGGCTTCAAGTTTTTCCATGGCCTTTCACCCTCACTGGATTTTCATCTTGGAGGGTCCCTACCCTTACCTAAACTCAATCATCTTCAACCTCCAACCATATATAACCCAGTCTCTTCCTTTGGGGATGTCCAAGCAGCCACCTTTGATCCGTCTGGAAGCTCAAATTCTATGATTAGTTTCAATTACCCAACAACCGGAGGAGGATTCAGCAGTGTAATCCAGGGTATGAGCTCTATGAACGTTAACTGTAACCTTGCTTCTTCAATTGAATCATTGAGTTCTGTTAATCAAGACTTGCACTGGAAGCTACAGCAGCAGAGGTTAGCGATGCTGTTTGGCGGTGACGATAATGGCCAGAAAGACGATGGTGTTTCAGCGGTTACTCTTGAGAACCAAATCCAGAGACCGCAACCCATTTTGTTTCAGAATCTTGAGATTTCAAAGCCTGAGATTAATTGCGTGGCTGCTGGTAATTCCAGAAAAGAAGGCCTAGCCACTGGTGATACCCCTACGGAGTGGTTCTTTGGGAATTCTTTTGCTTCTGTGACTCCTACGCCCCCAAGCACCAGCAGCGGTGGGAATAATGGCTATGATAATGCAGCCAATAACTGGAGTTCTGTTCATGCTTGGGGTGATGTGCAGCAGCAATATAATGCTATGCCCTAG 1008 0.4911 MMSQENNSPSKEAAAKEDGSPSSGGRKNASARPPEQGLKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKKVKSSSSRLSGDPKDPGFPGELSGFKFFHGLSPSLDFHLGGSLPLPKLNHLQPPTIYNPVSSFGDVQAATFDPSGSSNSMISFNYPTTGGGFSSVIQGMSSMNVNCNLASSIESLSSVNQDLHWKLQQQRLAMLFGGDDNGQKDDGVSAVTLENQIQRPQPILFQNLEISKPEINCVAAGNSRKEGLATGDTPTEWFFGNSFASVTPTPPSTSSGGNNGYDNAANNWSSVHAWGDVQQQYNAMP 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2447g00001 335 Pfam Dof domain, zinc finger 36 92 IPR003851 GO:0003677|GO:0006355
Pral2447g00001 335 ProSiteProfiles Zinc finger Dof-type profile. 38 92 IPR003851 GO:0003677|GO:0006355
Pral2447g00001 335 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 22 220 IPR045174 GO:0003700|GO:0006355
Pral2447g00001 335 MobiDBLite consensus disorder prediction 88 108 - -
Pral2447g00001 335 ProSitePatterns Zinc finger Dof-type signature. 40 76 IPR003851 GO:0003677|GO:0006355
Pral2447g00001 335 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2447g00001 Pral-Chr2447 5825 7194 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2447g00001 2 335 C2C2-Dof Transcription Factor Family AT5G65590 40.960 1.06e-64 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pral2447g00001 zf-Dof 1.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2447g00001 - - qsu:111999513 402.905