Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2345g00004 ATGAGGAGCCATATCCAGTTTCTCTTGGGACTTGCGCTCTTCAGCATTATCTGCCTCGTTCAAACAAAATCCATCATCGAACCCTGCTCTTCCTCAGACTCCTGCTTTTCTCTTCTCTCCTTCGTCGTTCCCTGGGACTCCAAGCTCTCTGAAATCGCCTCGCGCTTCCAGGTCAATGTCTCCGACGTCCTCGCGGCTAATTCCATCTTCCCGATATCACAGAAACTCTCCGATCAGATCATCAGATCCAAATCCGTCGTGAAGATCCCCACGTCGTGCCCTTGCGTAGACGGAATCCGAAGATCTATGTCCACGAACTACACGGTGCAAGCATCGGACACACTGGAGACCATATCGGAGGGATTCGGCGGGCTGGTGAGCGCGGACCAGTTAGCGACGGTGAACAGCATCAATGCGACGAATCGTTTAACGAACGGAGGGAGGTTGGTGATACCGTTGCCGTGCACGTGCTTGAGTAACGTGAGGAACGGCGAAACGACAGTCTATATGTCGTATGTGGTGAGAGAGGGAGAGAGCTTAAGGAGCATAGCGTCGGGTTCCAAAACGACAGTGTCGGATTTGGAAGCTATCAATGGATTGGGTCACGCCACCGTCGAACCGGGAGATATCATTGCCGTTCCCATTGCAGCATGTTCTTCAGCAACACTGAATTGGTACAACGAGTCTCTCATCGTCCCTAATGGCTCCTACGCTCTCACTGCCTCTCGCTGCATCAAATGCTCCTGTAACCCCACTGATCTCAGGCTGCAATGTTACCCATCTGGTCTACCAGTTCCTTGCTTCAACTTACAGTGCAAAGAATCCAATCTTGTAATTGGCGACCAACATGTCACTTATTTCAAACCTGGCTGCAATGTCACTCAGTGTCTTTATCGTGGCCATAGAGGCGGCAAGATTCTCAGAAGTGTGTCGAAATCTTCTTATCTCAAGTGCCCCGAAAATTTGACTTATAATGCGGCATCTCCTTGGCCATCCATAAGTTTAAATCCCGCAATAATGCCATTTGGGGCACTTTCTCCATATCCTTCACCTAGTCCTGTTTCTGATGCTTCCATGCACACGGCTCAAGTTTCAATGGAGTTGCTCCTATTACTACTTTGGATTTGTTTCCTGTGA 1137 0.496 MRSHIQFLLGLALFSIICLVQTKSIIEPCSSSDSCFSLLSFVVPWDSKLSEIASRFQVNVSDVLAANSIFPISQKLSDQIIRSKSVVKIPTSCPCVDGIRRSMSTNYTVQASDTLETISEGFGGLVSADQLATVNSINATNRLTNGGRLVIPLPCTCLSNVRNGETTVYMSYVVREGESLRSIASGSKTTVSDLEAINGLGHATVEPGDIIAVPIAACSSATLNWYNESLIVPNGSYALTASRCIKCSCNPTDLRLQCYPSGLPVPCFNLQCKESNLVIGDQHVTYFKPGCNVTQCLYRGHRGGKILRSVSKSSYLKCPENLTYNAASPWPSISLNPAIMPFGALSPYPSPSPVSDASMHTAQVSMELLLLLLWICFL 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2345g00004 378 ProSiteProfiles LysM domain profile. 170 213 IPR018392 -
Pral2345g00004 378 ProSiteProfiles LysM domain profile. 105 151 IPR018392 -
Pral2345g00004 378 SUPERFAMILY LysM domain 170 214 IPR036779 -
Pral2345g00004 378 CDD LysM 107 151 IPR018392 -
Pral2345g00004 378 Gene3D LysM domain 101 160 IPR036779 -
Pral2345g00004 378 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 6 320 - -
Pral2345g00004 378 CDD LysM 171 213 IPR018392 -
Pral2345g00004 378 SMART LysM_2 171 214 IPR018392 -
Pral2345g00004 378 SMART LysM_2 106 152 IPR018392 -
Pral2345g00004 378 SMART LysM_2 49 90 IPR018392 -
Pral2345g00004 378 Gene3D LysM domain 161 224 IPR036779 -
Pral2345g00004 378 Pfam LysM domain 49 90 IPR018392 -
Pral2345g00004 378 Pfam LysM domain 107 152 IPR018392 -
Pral2345g00004 378 Pfam LysM domain 172 214 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2345g00004 Pral-Chr2345 31040 36174 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2345g00004 7 319 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 43.711 7.68e-81 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2345g00004 - - gmx:100819382 466.848