Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1980g00003 ATGGAATTAGGTTCAAATCCAAAGCCTCCTATGTTGGAGAAAAAGGCAAGGCCTCAGAAAGATCAAGCCTTGAACTGTCCACGGTGCAATTCAACCAACACCAAATTCTGCTACTACAACAACTATAGCCTCTCTCAGCCCAGATACTTCTGTAAGACTTGCAGAAGGTATTGGACTGAAGGTGGCTCTCTCAGGAATGTTCCTGTGGGTGGAGGTTCCAGAAAAAACAAGAGACCTTCTTCTTCTTCTTCATCTTCTTCAGCAGCACCAAAGAAGCTTCCAGAACCTTCTCCTCCGAACCCCACCAGCAACAAGATCCATCAAGCCCAGGATCTTAACCTGGCATACCCAACACCCCCATCACTCCCTCCACAACCTGAGATTTCCGGCAGCTCAAATTCTTCGAGGGGTTTGATGAATTCCTTGATGCCCATGTCGGTTTCATCAGATGGAGGCATGATGTATAACAGTAATAGTAATTCAGCCCATCATGGGTTTCCTTTGGAGTTCAAGCCTCATCATCAAGGGCTTAATTTTAGCTTTGAGGGGTTTGAGAATAATGGGTTTGGAAGTGGTCTTCATCAGGGAATGCAATTGGGTAATTCTGCTGGTGGCGCAAGGATCTTGTTTCCTATTGAAGATTTGAAGCACGTGCCAAGCACCACCCCTAGTCATGAGTTTGATCAGCAAAATACTAGAGGAAGCCATGGAGATCCGAGTGGGTTTTGGAATGGCATGTTAGGTGGAGGAGCATGGTAG 759 0.4625 MELGSNPKPPMLEKKARPQKDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRPSSSSSSSSAAPKKLPEPSPPNPTSNKIHQAQDLNLAYPTPPSLPPQPEISGSSNSSRGLMNSLMPMSVSSDGGMMYNSNSNSAHHGFPLEFKPHHQGLNFSFEGFENNGFGSGLHQGMQLGNSAGGARILFPIEDLKHVPSTTPSHEFDQQNTRGSHGDPSGFWNGMLGGGAW 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1980g00003 252 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 13 175 IPR045174 GO:0003700|GO:0006355
Pral1980g00003 252 MobiDBLite consensus disorder prediction 75 91 - -
Pral1980g00003 252 MobiDBLite consensus disorder prediction 222 238 - -
Pral1980g00003 252 ProSitePatterns Zinc finger Dof-type signature. 26 62 IPR003851 GO:0003677|GO:0006355
Pral1980g00003 252 MobiDBLite consensus disorder prediction 221 252 - -
Pral1980g00003 252 Pfam Dof domain, zinc finger 21 78 IPR003851 GO:0003677|GO:0006355
Pral1980g00003 252 MobiDBLite consensus disorder prediction 62 142 - -
Pral1980g00003 252 ProSiteProfiles Zinc finger Dof-type profile. 24 78 IPR003851 GO:0003677|GO:0006355
Pral1980g00003 252 MobiDBLite consensus disorder prediction 1 25 - -
Pral1980g00003 252 MobiDBLite consensus disorder prediction 127 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1980g00003 Pral-Chr1980 2513 4111 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1980g00003 11 252 C2C2-Dof Transcription Factor Family AT3G61850 39.929 4.78e-48 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pral1980g00003 zf-Dof 1.2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1980g00003 - - pcin:129300981 451.44