Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1980g00001 ATGGACACAGCTCAGTGGGCACAGGGGAATATTGGATTGGTTAAACCTATGGAATTAGGTTCAAATCCAAAGCCTCCTATGTTGGAGAAAAAGGCAAGGCCTCAGAAAGATCAAGCCTTGAACTGTCCACGGTGCAATTCAACCAACACCAAATTCTGCTACTACAACAACTATAGCCTCTCTCAGCCCAGATACTTCTGTAAGACTTGCAGAAGGTATTGGACTGAAGGTGGCTCTCTCAGGAATGTTCCTGTGGGTGGAGGTTCCAGAAAAAACAAGAGACCTTCTTCTTCTTCTTCATCTTCTTCAGCAGCACCAAAGAAGCTTCCAGAACCTTCTCCTCCGAACCCCACCAGCAACAAGATCCATCAAGCCCAGGATCTTAACCTGGCATACCCAACACCCCCATCACTCCCTCCACAACCTGAGATTTCCGGCAGCTCAAATTCTTCGAGGGGTTTGATGAATTCCTTGATGCCCATGTCGGTTTCATCAGATGGAGGCATGATGTATAACAGTAATAGTAATTCAGCCCATCATGGGTTTCCTTTGGAGTTCAAGCCTCATCATCAAGGGCTTAATTTTAGCTTTGAGGGGTTTGAGAATAATGGGTTTGGAAGTGGTCTTCATCAGGGAATGCAATTGGGTAATTCTGCTGGTGGCGCAAGGATCTTGTTTCCTATTGAAGATTTGAAGCACGTGCCAAGCACCACCCCTAGTCATGAGTTTGATCAGCAAAATACTAGAGGAAGCCATGGAGATCCGAGTGGGTTTTGGAATGGCATGTTAGGTGGAGGAGCATGGTAG 807 0.4634 MDTAQWAQGNIGLVKPMELGSNPKPPMLEKKARPQKDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRPSSSSSSSSAAPKKLPEPSPPNPTSNKIHQAQDLNLAYPTPPSLPPQPEISGSSNSSRGLMNSLMPMSVSSDGGMMYNSNSNSAHHGFPLEFKPHHQGLNFSFEGFENNGFGSGLHQGMQLGNSAGGARILFPIEDLKHVPSTTPSHEFDQQNTRGSHGDPSGFWNGMLGGGAW 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1980g00001 268 ProSitePatterns Zinc finger Dof-type signature. 42 78 IPR003851 GO:0003677|GO:0006355
Pral1980g00001 268 MobiDBLite consensus disorder prediction 91 107 - -
Pral1980g00001 268 MobiDBLite consensus disorder prediction 238 254 - -
Pral1980g00001 268 MobiDBLite consensus disorder prediction 237 268 - -
Pral1980g00001 268 MobiDBLite consensus disorder prediction 78 158 - -
Pral1980g00001 268 ProSiteProfiles Zinc finger Dof-type profile. 40 94 IPR003851 GO:0003677|GO:0006355
Pral1980g00001 268 Pfam Dof domain, zinc finger 37 94 IPR003851 GO:0003677|GO:0006355
Pral1980g00001 268 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 29 191 IPR045174 GO:0003700|GO:0006355
Pral1980g00001 268 MobiDBLite consensus disorder prediction 143 158 - -
Pral1980g00001 268 MobiDBLite consensus disorder prediction 15 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1980g00001 Pral-Chr1980 2200 4111 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1980g00001 1 268 C2C2-Dof Transcription Factor Family AT4G24060 38.953 1.11e-49 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pral1980g00001 zf-Dof 1.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1980g00001 - - pcin:129300981 466.848