Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1772g00007 ATGTTGTCCTGTTTGCTTACCCAGAAAATGCATGAAAGTAGCGACCCTGCAATTAAGCTCTTCGGAATGAAGATTCCATTGCAGGTTGAAGGCCGGGATACTGCCATTTCCGCCCACGATTCTGTCTCAAGTGCGGCCATTGATGCCAAGAAAGGAGGAGGAGACGACGGAGGACAGAAGAGACGACAAGATGATGAACCCGACAAGGAATCTCTAATTGGAAAAGTCAGAGATAGCCCTGAAGAGAAAGAGCCTGAACTCCTTCCGGAGGCAAGCGTGAAGCCGAGCACACCATCGATGGACGAAGAAGCTGCAAAATCTTCAAAGAATGACGATGGAACCAACGCGCAGGAGAAAATCCTGAAGAAGCCAGATCAAGTTCTTCCGTGTCCTCGCTGCAACAGCATGAACACAAAGTTCTGTTACTACAATAACTACAACGTCAATCAGCCTCGCCATTTCTGCAAATCCTGTCAAAGATACTGGACAGCTGGTGGCACCATGAGGAACGTTCCAGTGGGTGCAGGGCGGCGAAAGACCAAAAACAACTCCTCTCATTATCGCTACATCACCATTAACGAAGCTCTTCGAGTAGCCAGAATTAGTGCTCCTAATGGAACTAATGGAAAACTTCTCAGCTTTGGATCAGATGCGCCCATGGGTTCTATACTGAATCTAGCAGGGAACAAAATTGTTTCTCAAAGCACCCGAAATGGGTTCCATAATCACATCTTGGAGAATCGGAGAAACACATCTTCCATAGAAGAAAGCAAGAAAAAAATCCTCCAAAGCTCTTGTGTTCCTAGTGTTCCCTGGCCTGTCACTCCAGGTTTTCCTACCCTGTCAGTTAATCGGAAGGCAAATCTTCCCAGGTTTTCCACGAACTTTTCTTCCCCAACCTTAAATTCATCGAGCTTTGGTCCGAATTCTCCGATATTAGGAAAGCGCAAGAGGGATGGGGACGTGCTTGAGCCAGGGTATCTGCAAAAAGAGGAACCATCGAAACAGAGAAGCGGCTCTGTTTTGGTGCCTAAAACACTGAGAATTCATGACCCAATTGAGGCTGCCAAGAGTTCAATATGGGCTACCTTAGGAATAAAGAAGGGATCATTGAATGGTGGAAGCATGTTTGAGGCGTTTCAATCGAGGAAACATCATGGGATTGAAATCTCTTCGGTGTTAAGCGCCAACCCAGCAGCTTTGTCTAGATCCGTTTACTTTCATGAGAACACGTGA 1236 0.4652 MLSCLLTQKMHESSDPAIKLFGMKIPLQVEGRDTAISAHDSVSSAAIDAKKGGGDDGGQKRRQDDEPDKESLIGKVRDSPEEKEPELLPEASVKPSTPSMDEEAAKSSKNDDGTNAQEKILKKPDQVLPCPRCNSMNTKFCYYNNYNVNQPRHFCKSCQRYWTAGGTMRNVPVGAGRRKTKNNSSHYRYITINEALRVARISAPNGTNGKLLSFGSDAPMGSILNLAGNKIVSQSTRNGFHNHILENRRNTSSIEESKKKILQSSCVPSVPWPVTPGFPTLSVNRKANLPRFSTNFSSPTLNSSSFGPNSPILGKRKRDGDVLEPGYLQKEEPSKQRSGSVLVPKTLRIHDPIEAAKSSIWATLGIKKGSLNGGSMFEAFQSRKHHGIEISSVLSANPAALSRSVYFHENT 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1772g00007 411 ProSiteProfiles Zinc finger Dof-type profile. 128 182 IPR003851 GO:0003677|GO:0006355
Pral1772g00007 411 MobiDBLite consensus disorder prediction 53 89 - -
Pral1772g00007 411 MobiDBLite consensus disorder prediction 38 123 - -
Pral1772g00007 411 Pfam Dof domain, zinc finger 125 182 IPR003851 GO:0003677|GO:0006355
Pral1772g00007 411 PANTHER CYCLIC DOF FACTOR 2 10 411 IPR045174 GO:0003700|GO:0006355
Pral1772g00007 411 MobiDBLite consensus disorder prediction 104 119 - -
Pral1772g00007 411 MobiDBLite consensus disorder prediction 298 319 - -
Pral1772g00007 411 ProSitePatterns Zinc finger Dof-type signature. 130 166 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1772g00007 Pral-Chr1772 31523 33783 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1772g00007 10 409 C2C2-Dof Transcription Factor Family AT3G47500 40.471 4.79e-94 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pral1772g00007 zf-Dof 4.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1772g00007 - - gsj:114409713 386.726