Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1006g00004 ATGTCGGCCAATCATCCCGGTTTTATACTCTTCGGCCAAAAGATGTCCTCCTCGTCGGGATCTCCTCCTCCGGCTGCCCCTTCTCTGATTCCATCTAACTCTCCTCCCGAGCATGATTGGAGTAGCTCAAACAAAGCAGAAGTGGGAACGCCTTCTACCGAAAGCTCCGAACACCAAAATGTGCAGAAAAATGAGCCAACGAAGATAAGCAGTTCAGAAGAATTTAAAATGATGAAGAAACCAGACAAGATTCAACAGTGTCCACGATGCAACAGTATGGATACAAAGTTCTGTTATTTCAATAACTACAACGTGAATCAACCTCGACATTTCTGCAAGAGCTGCCACAGATATTGGACTGCCGGCGGAGCAATGAGAAATGTCCCAGTTGGTGCTGGAAGACGAAGGAACAGGCAACTGTCCTCGCCATACCATCGCCACACTACAGTATCCTCCGAAGGCATTCCAGTTGCAAACTCAAAGACAGACTCATCTTCTCACCAGTGTTTCTCAACTCTTGAATCCTCATCTGCTTTCAAGTCAGCACCCCCAGATAATACTAGTACCGTGTTGAGATTTGGTCCAGATGCCCCTGTTTCTGATTCTGGGAGTTCAATTCTCAATCTTGGAAATTGGGAGGAGGCATCCGGGTGTGGATCTTCTGTGACCAATGCGAGTGGGGCAGGGGGAAATGAAGTATCAGAACTTGCTATGCAATGGAACAGAAATGTGTCCAATCTGATGAATACATCAAATGGTGTGCGATGTTATCCTGCGGCTCCATGGGTGTTTCCGGCGCAGTGGCATGCTGAGAATAAGATTGGGTCACCTAACATTCCTGTGCAATTTGTGGCAGCTCCATGTTGGAGTAATGGGGCTATCTTTTCTGCGGGAGGAACAGGAACGGGAACAGTTTCAATTGGCTCTAATGGCTGCCTCTCCTCCTCATCCTCTACCAGTAATGGCCATTGCTCAGGCAATGGCTCCCCAGCCCTTGGAAAACACTGA 1008 0.4792 MSANHPGFILFGQKMSSSSGSPPPAAPSLIPSNSPPEHDWSSSNKAEVGTPSTESSEHQNVQKNEPTKISSSEEFKMMKKPDKIQQCPRCNSMDTKFCYFNNYNVNQPRHFCKSCHRYWTAGGAMRNVPVGAGRRRNRQLSSPYHRHTTVSSEGIPVANSKTDSSSHQCFSTLESSSAFKSAPPDNTSTVLRFGPDAPVSDSGSSILNLGNWEEASGCGSSVTNASGAGGNEVSELAMQWNRNVSNLMNTSNGVRCYPAAPWVFPAQWHAENKIGSPNIPVQFVAAPCWSNGAIFSAGGTGTGTVSIGSNGCLSSSSSTSNGHCSGNGSPALGKH 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1006g00004 335 ProSitePatterns Zinc finger Dof-type signature. 87 123 IPR003851 GO:0003677|GO:0006355
Pral1006g00004 335 MobiDBLite consensus disorder prediction 34 68 - -
Pral1006g00004 335 Pfam Dof domain, zinc finger 82 139 IPR003851 GO:0003677|GO:0006355
Pral1006g00004 335 ProSiteProfiles Zinc finger Dof-type profile. 85 139 IPR003851 GO:0003677|GO:0006355
Pral1006g00004 335 MobiDBLite consensus disorder prediction 1 80 - -
Pral1006g00004 335 PANTHER CYCLIC DOF FACTOR 2 3 335 IPR045174 GO:0003700|GO:0006355
Pral1006g00004 335 MobiDBLite consensus disorder prediction 316 335 - -
Pral1006g00004 335 MobiDBLite consensus disorder prediction 136 163 - -
Pral1006g00004 335 MobiDBLite consensus disorder prediction 143 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1006g00004 Pral-Chr1006 16492 18541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1006g00004 53 269 C2C2-Dof Transcription Factor Family AT5G39660 38.991 1.71e-39 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pral1006g00004 zf-Dof 3.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1006g00004 - - pcin:129288604 528.48