Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g02266 ATGACGACTCGAATTGCACCTGGTGTGGGGGCCAATTTGCTCGGCCAACATGCTGCTGAGAGGAATCAAGACGCCACTGCTTATGTCGGCAATCTCGACCCTCAGATAAGTGAGGAGTTATTGTGGGAGTTGTTCGTTCAGGCGGGTCCAGTGGTTAATGTCTATGTCCCCAAGGACAGAGTGACCAACCAACATCAGGGTTATGGGTTTGTTGAATTCCGGAGTGAAGAAGATGCTGACTATGCCATCAAGGTTCTTAACATGATCAAGCTTTATGGGAAACCGATCCGTGTGAATAAGGCATCCCAAGATAAAAAGAGCTTGGATGTTGGTGCAAACCTTTTCATTGGCAATCTTGATCCTGATGTAGATGAGAAGCTCTTGTACGATACTTTCAGTGCATTTGGAGTTATTGTTACTAATCCGAAGATCATGAGAGATCCCGAGACAGGAAATTCCCGTGGTTTTGGCTTCATCAGCTATGATTCATTTGAGGCATCTGATTCTGCCATTGAGGCGATGAATGGACAATATCTTTGCAATCGTCAAATTACAGTGTCATATGCTTATAAGAAAGACACTAAGGGTGAACGGCACGGTACCCCCGCAGAAAGAGTTTTGGCTGCAAGTAATCCAACTGCACAGAAGAGCAGGCCTCATACTTTATTTGCCAGCGGACCTCCAACACTTCCCAGTGTTCCTCAGGCTAATGGGGTTGCTCCAGTGCCTCCCCGTCCCTTTGCTAATGGGGTTGCTCCTGGTTCCATTCCTGCCCTTCGTCCACCACCCCCTCAAGCTGCTGCATTCCAGCCTATGCCAATGCCTGGACAACCAACCTGGCATCAGCAACAGCCAGGTCAAACAATCTTACCTCCTGCAATGCCTCCTCCACCTCAAGTTCAGCACTTCAGGCCACCACACCCTGGTATGCAGCAGATGCCACCACCTCCACAAGCTCCTCCCAGGCCTCTTCCACCACCATCAATAATGGGAAGTCAGCCACCACCTGTTTGGCGTCCACCACCACCACCTCAGCATCAGGGTGGACGGCCTATGCTATACCCTCAGTCTATGCCTCCGCCACCGCCTCCCCAGTAA 1098 0.5027 MTTRIAPGVGANLLGQHAAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPTAQKSRPHTLFASGPPTLPSVPQANGVAPVPPRPFANGVAPGSIPALRPPPPQAAAFQPMPMPGQPTWHQQQPGQTILPPAMPPPPQVQHFRPPHPGMQQMPPPPQAPPRPLPPPSIMGSQPPPVWRPPPPPQHQGGRPMLYPQSMPPPPPPQ 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g02266 365 CDD RRM1_SF3B4 28 100 IPR034158 -
Phco9g02266 365 Gene3D - 16 110 IPR012677 -
Phco9g02266 365 FunFam Splicing factor 3b subunit 4 16 108 - -
Phco9g02266 365 CDD RRM2_SF3B4 111 193 IPR034159 -
Phco9g02266 365 PANTHER SPLICING FACTOR 3B SUBUNIT 4 14 360 - -
Phco9g02266 365 SUPERFAMILY RNA-binding domain, RBD 25 194 IPR035979 GO:0003676
Phco9g02266 365 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 191 IPR000504 GO:0003723
Phco9g02266 365 MobiDBLite consensus disorder prediction 251 271 - -
Phco9g02266 365 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 103 IPR000504 GO:0003723
Phco9g02266 365 FunFam splicing factor 3B subunit 4 109 200 - -
Phco9g02266 365 MobiDBLite consensus disorder prediction 251 365 - -
Phco9g02266 365 MobiDBLite consensus disorder prediction 289 365 - -
Phco9g02266 365 PRINTS Proline rich extensin signature 232 244 - -
Phco9g02266 365 PRINTS Proline rich extensin signature 285 301 - -
Phco9g02266 365 PRINTS Proline rich extensin signature 304 321 - -
Phco9g02266 365 PRINTS Proline rich extensin signature 257 278 - -
Phco9g02266 365 PRINTS Proline rich extensin signature 212 228 - -
Phco9g02266 365 PRINTS Proline rich extensin signature 323 348 - -
Phco9g02266 365 Gene3D - 111 200 IPR012677 -
Phco9g02266 365 SMART rrm1_1 26 99 IPR000504 GO:0003723
Phco9g02266 365 SMART rrm1_1 113 187 IPR000504 GO:0003723
Phco9g02266 365 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 184 IPR000504 GO:0003723
Phco9g02266 365 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 97 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g02266 Phco-Chr9 47899602 47905006 Dispersed/Transposed