Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g02233 ATGGAGAACAACAATGGCAGTTCCCATCAACCTAACAACAACAAATGGGGAATTCCATTCTTGGTTTTCTTCAAAGACTCAAGACTTATTTTCAAGCTGGATGCACTTTCTAGAGAGATACTGGGAATTGCATTCCCTGCTGCACTTGCTGTTGTTGCTGATCCCATTGCTTCTTTGATAGACACAACCTTCATTGGCCACTTGGGACCACTAGAACTTGCTGCTGCTGGAGTTTCCATTGCTTTGTTCAACCAAGCTTCAAGAATCACCATTTTTCCTCTTGTTAGTATTACAACTTCCTTTGTGGCTGAGGAAGATACCATCCAAAACATGAACACCAAAGAAACTGAATATGATAACACTAAGCTCAAGCAAGCAACTGTGTCTAAGGATCATATGGTTGCTGATATAGAAAATGATGCAGCCAACCACAATGTTGAGGCTCCAAAACAATTGACAGATGAATCAAACAATGTTGTAGCAAAGATTGTTACAGGGAGCATGGACACAAATAATGAAAATGAAAAAGTTATGACTAAGAAGAAGCAAAAAGTTGGGAAGAAGATGATTGCTTCTGCATCAACAGCCTTACTTTTTGGAACAATCCTTGGCCTCCTTCAAACTGCAATCCTTTCATTTGCTGCAAAACCTCTTCTATATGCAATGGGTCTTAGACATGATTCTCCAATGTTAGATCCAGCAGAGAAGTACCTAAGATTAAGATCAATTGGGTCTCCTGCTGTTCTTCTCTCCTTGGCCATGCAAGGAATCTTTAGAGGTTTCAAAGACACAACAACTCCTTTATATGTCATTGTTTCGGGATATACTTTCAATGTTCTGTTGGACCCAATACTTATCTTTTATATGAAATTGGGCCTGAAAGGTGCAGCCATGGCCCATGTTATCTCCCAGTACTTGATGGCAACCACCCTCCTTTTATTGTTGATGAAAAGAGTGCACCTCCTACCTCCAAGCATGAAGGATTTGCAGATTTTCAGATTTCTTAAAAATGGAGGTCTATTGTTGATAAGGGTAGTTTCAGTGACATTTTGTATGACCTTAGCAGCATCATTGGCAGCAAGGTTAGGTCCAATTCCCATGGCTGCATTTCAACCAGGCCTGCAAATCTGGTTGGCATCATCCCTTCTTGCAGATGGTTTAGCTGTGGCTGTACAGACAATTCTTGCATCTTCATTTGCTGAGAAAGACTATAACAAGGCTACTGCTGCTGCAACAAGAACACTGCAAATGACTTTTGTTTTGGGAATTGGACTCTCTTTTGCAGTTGCTGTTGGATTATACTTTGGAGCTGCAATATTTTCCAAAAATGCTACTGTTGTGCAACTCATCAAAATAAGCATGCCGTTTGTTGCAGCTACTCAACCAATCAATGCATTGGCCTTTGTCTTTGATGGAGTCAATTATGGAGCTTCTGATTTTGCTTATTCTGCATATTCTTTGGCAAGTTTTGGTGTCACTGATAAGCATTCCTATAGAAATCTTTCTCTTCGGGAGCAAACAATTCATAGGAATATGGATTGCATTAACCATATACATGATTCTTCGTATGTTTGTTGGAATATGGAGGATGGGAACTGGGACAGGACCATGGTACTATCTTAG 1623 0.4017 MENNNGSSHQPNNNKWGIPFLVFFKDSRLIFKLDALSREILGIAFPAALAVVADPIASLIDTTFIGHLGPLELAAAGVSIALFNQASRITIFPLVSITTSFVAEEDTIQNMNTKETEYDNTKLKQATVSKDHMVADIENDAANHNVEAPKQLTDESNNVVAKIVTGSMDTNNENEKVMTKKKQKVGKKMIASASTALLFGTILGLLQTAILSFAAKPLLYAMGLRHDSPMLDPAEKYLRLRSIGSPAVLLSLAMQGIFRGFKDTTTPLYVIVSGYTFNVLLDPILIFYMKLGLKGAAMAHVISQYLMATTLLLLLMKRVHLLPPSMKDLQIFRFLKNGGLLLIRVVSVTFCMTLAASLAARLGPIPMAAFQPGLQIWLASSLLADGLAVAVQTILASSFAEKDYNKATAAATRTLQMTFVLGIGLSFAVAVGLYFGAAIFSKNATVVQLIKISMPFVAATQPINALAFVFDGVNYGASDFAYSAYSLASFGVTDKHSYRNLSLREQTIHRNMDCINHIHDSSYVCWNMEDGNWDRTMVLS 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g02233 540 CDD MATE_DinF_like 38 489 IPR044644 -
Phco9g02233 540 Pfam MatE 343 487 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Phco9g02233 540 Pfam MatE 188 284 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Phco9g02233 540 PANTHER PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED 7 492 IPR044644 -
Phco9g02233 540 NCBIfam MATE family efflux transporter 46 487 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g02233 Phco-Chr9 47669188 47675057 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g00222 10 1901171 1905291 Phco9g02233 9 47669188 47675057 ECH
Phco9g02233 9 47669188 47675057 Phco9g02233 9 47669188 47675057 ECH
Phco9g02233 9 47669188 47675057 Phco10g00222 10 1901171 1905291 PCT