Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g02232 ATGAAAACGCTAACAGTTAACACCGAAGATTCTTTTTCCAGTTTGCTAGAGCTTGCCTCTAACAATGATATTGAAGCTTTCAGGGTTCTTTTAGAGAAGGATCCTTCTGCAATCAACGAGGTTGGGTTCTGGTATGGGCGTCAAAACGGATCGAAGCAAATTGTTCTTGAGCATCGAACCCCTTTGATGGTTGCTGCTACCTACGGTAGCAATGATGTTCTCAAGCTTATTCTGATGTGCCCTGAGGCGGACGTCAATTTTGCTTGTGGGGCGAATAAAACCACCGCCCTTCACTGTGCTGCTTCTGGTGGATCTGCCAATGCTGTTGAAACTGTGAAGCTGCTTTTATCCGCAGGTGCTGATGCGAGTTGCATGGATGCCTTTGGGAATCGCCCAATAGATGTGACTGTGGTTCCTCCTAAACTGCAAGAAATGAAACCTGTACTTGAGGAGCTTTTATCGGATATTGCTTCCGATGGGTTTATTGGTGGGTCCATTGGTGAATTCTCTGTTCCTGTATCTGTTAATTCATCCAGCCCTGGTTCCCCGAATGGATTGCCATACTCTCCGTCCGAGTCGCCACCATCTCCAGTGGTGGCAAAGTTTACTGAAGCAGCTATTGGCTCTTTCTCAGAGAAGAAGGAGTATCCCATTGATCCATCTCTGCCTGATATAAAGAACAGCATATACGCCACCGACGAGTTTCGGATGTTTTCCTTCAAGGTGAGGCCTTGTTCCCGTGCCTACTCTCATGATTGGACGGAGTGCCCATTTGTTCACCCTGGAGAGAATGCAAGGAGGAGAGACCCTAGGAAGTTCCATTACAGCTGTGTGCCGTGCCCTGATTTTAGGAAAGGGGCTTGTAGGCGTGGAGACATGTGTGAATATGCTCATGGGGTGTTTGAATGCTGGCTTCACCCGGCTCAGTATAGGACTAGGCTTTGCAAAGACGGTACTAGTTGTAATCGAAGGGTGTGTTTTTTTGCTCACACTGCAGAGGAGCTGCGTCCACTCTATGCGTCGACTGGATCTGCTGTTCCTTCGCCACGATCATCGGCCTCGGGTCCTAATGTCATGGACATGGCTGCTGCGATGAGCCTTTTGCCGGGCTCGCCTTCGTCGGTCTCTTCCATGTCGCCATCCCACTTTGGGCAACCGATGTCCCCATCTGCAAATGGCATTTCACTTTCCTCTGGTGCTTGGGCACAGCCAAACGTGCCAGCTCTTCATTTACCAGGAAGCAATCTTCAATCTAGCCGATTGAGGTCTTCCCTTAGTGCACGAGACATTCCACCCGAAGACTTCAATGGGATGCTTGATCTTGATGGCCACCAGCACCCTTTGAATGACTTGAGCTGTTACTTACAGCCTCGCCCCAGTGTTGGTTGTGTGAGTCGATCCGGTAGGTCCAAGACTCTAACTCCAGCTAATCTGGAAGACCTCTTTTCTGCTGAGATTGCATCGTCTCCCCGGTATTCGGATCCAGCAGCGGCGTCTGTGTTTTCCCCAACCCACAAATCAGCTGTTCTCAATCAGTTTCAACAGATACAAAGCATGTTATCACCGATTAATACTAATTTGCTTTCTCCTAAGAGTGTTGACCATCCTCTTTTACAGGCCTCCTTTGGTGTTTCTCCTTCCGGAAGGATGTCACCAAGAAGTGTGGAACCAATCTCACCGATGAGCACACGCCTATCGGCGTTTGCTCAGCGCGAGAGACAACAGCAGCAGCTACAGCTGCGAAGTGTCAGTTCAAGGGACCTTGGTGCCAACAGTCCTGTCTCTATTGTTGGCTCCCCTGTAAACGCGTGGTCCAAATGGGGATCTCCTAACGGAAAAGTTGATTGGTCAGTAAATGGAGACGAGCTTGGTAGTCAGATGCGAAGATCATCCTCATTTGAGCTTAAGCACAACGGTGAAGAGCCTGATCTGTCATGGGTGCAGACTCTGGTCAAGGAATCCCCACCTGAGATGATCAAAGAGAAGTTTGCTTCTCCTCTGCCTACAGCACCATCAGCGGATGGACCAAATTCTAATTCCCAAATTGAATCCATTGATCATTCCGTTTTAGGAGCCTGGCTTGAGCAAATGCAACTGGATCAGCTCGTAGTCTAG 2115 0.4908 MKTLTVNTEDSFSSLLELASNNDIEAFRVLLEKDPSAINEVGFWYGRQNGSKQIVLEHRTPLMVAATYGSNDVLKLILMCPEADVNFACGANKTTALHCAASGGSANAVETVKLLLSAGADASCMDAFGNRPIDVTVVPPKLQEMKPVLEELLSDIASDGFIGGSIGEFSVPVSVNSSSPGSPNGLPYSPSESPPSPVVAKFTEAAIGSFSEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTAEELRPLYASTGSAVPSPRSSASGPNVMDMAAAMSLLPGSPSSVSSMSPSHFGQPMSPSANGISLSSGAWAQPNVPALHLPGSNLQSSRLRSSLSARDIPPEDFNGMLDLDGHQHPLNDLSCYLQPRPSVGCVSRSGRSKTLTPANLEDLFSAEIASSPRYSDPAAASVFSPTHKSAVLNQFQQIQSMLSPINTNLLSPKSVDHPLLQASFGVSPSGRMSPRSVEPISPMSTRLSAFAQRERQQQQLQLRSVSSRDLGANSPVSIVGSPVNAWSKWGSPNGKVDWSVNGDELGSQMRRSSSFELKHNGEEPDLSWVQTLVKESPPEMIKEKFASPLPTAPSADGPNSNSQIESIDHSVLGAWLEQMQLDQLVV 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g02232 704 SMART ANK_2a 92 124 IPR002110 GO:0005515
Phco9g02232 704 SMART ANK_2a 10 40 IPR002110 GO:0005515
Phco9g02232 704 SMART ANK_2a 57 87 IPR002110 GO:0005515
Phco9g02232 704 SMART c3hfinal6 309 332 IPR000571 GO:0046872
Phco9g02232 704 SMART c3hfinal6 274 300 IPR000571 GO:0046872
Phco9g02232 704 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
Phco9g02232 704 FunFam Zinc finger CCCH domain-containing protein 66 232 300 - -
Phco9g02232 704 SUPERFAMILY Ankyrin repeat 10 137 IPR036770 -
Phco9g02232 704 MobiDBLite consensus disorder prediction 660 682 - -
Phco9g02232 704 Gene3D - 274 337 - -
Phco9g02232 704 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 279 299 IPR000571 GO:0046872
Phco9g02232 704 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Phco9g02232 704 ProSiteProfiles Zinc finger C3H1-type profile. 279 301 IPR000571 GO:0046872
Phco9g02232 704 Gene3D - 3 152 IPR036770 -
Phco9g02232 704 PANTHER UNKEMPT FAMILY MEMBER 17 654 IPR045234 -
Phco9g02232 704 Pfam Ankyrin repeats (3 copies) 19 124 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g02232 Phco-Chr9 47661452 47663566 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Phco9g02232 Ank_2 6.7e-10 CL0465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g00223 10 1914650 1917761 Phco9g02232 9 47661452 47663566 ECH
Phco9g02232 9 47661452 47663566 Phco9g02232 9 47661452 47663566 ECH
Phco9g02232 9 47661452 47663566 Phco10g00223 10 1914650 1917761 PCT