Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g02226 ATGGTGCCACGTTTCCTTTGTCATTTTCCCACAAAACAGATCAAAATTCTTAATCACAGATTCCATCTTGCAAACTCTGCCATGCCAACTGCATGCAATTCGGATTCTGAAAACCAAAGCTTTTCATATAGAAAAAGTTCTTCTAAGATGCCAGGAAAACCTGACACTGATGATTGGCGTGAGCAGATTCAGTTTCATCCTTGGTGGCGCGCAGTTGGGGAAAATGCCTCCAAATCATCTTCAGCTGATCAGTTAAATGGTTCTCCTTCACTGCCTGCAAATGATAAGACAGGTGGACGTGTTGCTAAAGAGTACCAAAACATCAAACATGACATGTCTTCAATTCCATTTACCATGGACAAACACCTTGCTCACAATCCCCACACGGAATTTGTTGGTCACTCAGTTGTTTTAACATCTCCTTATTTAGATGCACAGTATGGTCAAATGTTGACTACGTACGGCCAACAAGTTATGATAAACCCTCCATTGTATGGAATGCATCAGGCTAGAATGGCTTTGCCACTTGAAATGGAAGAGGAGCCTGTTTATGTCAATGCAAAGCAGTATCATGGTATTTTGAGGCGAAGACAATCACGTGCTAAGGCCGAACTTGAAAAGAAAGTAATTAGAAACAGAAAGCCATACCTCCACGAATCCCGTCACCTACACGCCATCAGAAGGGCAAGAGGCAATGGTGGTCGCTTTCTGAACACAAAGAAGCTTGAAAATAACAGTTCTAGCATCACTTCTGACAAAGGCGACAATGGTGGTGCAAACCCCTCAACAAACTCATTTCACACTCTACATGTGCTCTCCAACAATGAGAATCTAGGCTCATCAAAAACAGTTCAGGACATGCACAGAGTGCAGAATTTCAACAATGGTTACCATAATGAAAATGGTCTTACAGCACTATACCTTTCACAAGTGAATGGAAAGAAAAAGGGAGACTACTTTGGTAAAGAGAGAGACCCTGTTGGGGCTTTCAAATAG 996 0.4207 MVPRFLCHFPTKQIKILNHRFHLANSAMPTACNSDSENQSFSYRKSSSKMPGKPDTDDWREQIQFHPWWRAVGENASKSSSADQLNGSPSLPANDKTGGRVAKEYQNIKHDMSSIPFTMDKHLAHNPHTEFVGHSVVLTSPYLDAQYGQMLTTYGQQVMINPPLYGMHQARMALPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIRNRKPYLHESRHLHAIRRARGNGGRFLNTKKLENNSSSITSDKGDNGGANPSTNSFHTLHVLSNNENLGSSKTVQDMHRVQNFNNGYHNENGLTALYLSQVNGKKKGDYFGKERDPVGAFK 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g02226 331 MobiDBLite consensus disorder prediction 33 49 - -
Phco9g02226 331 ProSiteProfiles NF-YA/HAP2 family profile. 179 239 IPR001289 GO:0003700|GO:0006355
Phco9g02226 331 MobiDBLite consensus disorder prediction 235 267 - -
Phco9g02226 331 MobiDBLite consensus disorder prediction 238 267 - -
Phco9g02226 331 PRINTS CCAAT-binding transcription factor subunit B signature 182 204 IPR001289 GO:0003700|GO:0006355
Phco9g02226 331 PRINTS CCAAT-binding transcription factor subunit B signature 213 236 IPR001289 GO:0003700|GO:0006355
Phco9g02226 331 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 77 298 IPR001289 GO:0003700|GO:0006355
Phco9g02226 331 Gene3D - 179 240 - -
Phco9g02226 331 SMART cbf3 178 239 IPR001289 GO:0003700|GO:0006355
Phco9g02226 331 MobiDBLite consensus disorder prediction 76 100 - -
Phco9g02226 331 MobiDBLite consensus disorder prediction 76 93 - -
Phco9g02226 331 ProSitePatterns NF-YA/HAP2 subunit signature. 184 204 IPR018362 GO:0003677|GO:0016602
Phco9g02226 331 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 181 236 IPR001289 GO:0003700|GO:0006355
Phco9g02226 331 MobiDBLite consensus disorder prediction 33 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g02226 Phco-Chr9 47619429 47625704 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Phco9g02226 CBFB_NFYA 1.7e-25 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g02226 9 47619429 47625704 Phco9g02226 9 47619429 47625704 ECH