Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g02224 ATGGGTTTTGGCCATTTTCATGAAGATAACTTCAACCCTTCTCATGCATCATGTTTTAGACTTCTCACTTTTCAAGATGGATCAAAAAGTGATCATGGACCTCATCAAGCTTTCTCAACTGAGCTTCAAGGCCCCACCAGAGAAAGCAAAGCAAAACCCCCAAAAAATCTCATTTTTATTATTCAAATTCAAATTCTTCGTTCTCTTCACTCTCTCTTCCTCCTTCAACCAAACGCCGCCGTTTTCCGTTCCGATCTGCGAACCCTTTTCGCCATGCACATCAAGGAGGTTTGCTTGGAAGGGTTCAAGTCATACGCCACGCGCACCGTGGTTCCGGGCTTCGACCCCTTCTTCAACGCCATCACCGGCTTGAACGGTTCAGGCAAATCGAACATTCTCGATTCCATCTGCTTCGTTCTCGGCATCACCAATTTGCAGCAGGTTAGGGCTTCCAACCTCCAGGAACTCGTCTACAAGCAGGGCCAGGCCGGAATCACCAAAGCCACCGTCTCCATCCTCTTCGACAACTCCGACCGGTCGCGAAGCCCTCTCGGCTACGAAGGCCATTCCGAGATCACCGTCACAAGACAGATTGTTGTTGGGGGAAGGAACAAATATTTGATCAATGGGAAGCTTGCACAGCCTAGTCAAGTTCAGAACCTTTTTCATTCAGTGCAGCTAAATGTTAATAATCCACATTTCCTTATAATGCAAGGGCGGATCACTAAGGTTTTGAATATGAAACCGCCAGAGATATTGTCTATGCTTGAGGAAGCTGCTGGGACGAGAATGTACGAGACAAAGAAAGAGGCTGCTCTAAAAACACTTGAGAAGAAGCAGAGCAAGGTTGACGAGATTAACAAGCTTCTTGACCAGGAAATACTGCCTGCTTTGGAGAAGTTAAGGAAAGAAAAGACACAGTACATGCAATGGGCTAATGGCAATGCTGACTTAGATAGGCTGAGAAGGTTCTGTGTTGCTTATGATTATGTTCAAGCGGAGAGAATTAAAGACAATGCTGCTTCGGAGGTGGAAGAAGTGAAAGCTAAGATAGCTGAGATTGATGATGTTGCTAAGACAAATCAGGTGGAAATAAAGGAAATGGAGGTCAAAATAGCTCAGTTGACTGTTGAAAAGGAAGCTAGCATGGGTGGAGAAATGAAATCTCTCTCAGAGAAGGTAGACGTGCTTTCCCAGAATCTTGTGAGGGAAACGTCCGTATTAAATAACAAAGAAGACACTTTGAGGAGTGAAGAAGCCAACAAAGCAAATATTGTTAAAAACATTGAAGAGTTGAAGCAATCTGTAGAAGAGAAGGCGTCTTCTGTTAAAAAGGCTGAAGAGGGGGCATCAGATCTGAAAAATACAGTTGACGAGCTTACAAAGAGTCTAGAGGAGCATGAAAAAGAATACCAGGGTGTTTTAGCTGGCAAGAGCAGTGGTAATGAGGAGAAGTGCTTAGAGGATCAACTAAGGGATGCAAAGGTAGCAGTTGGTAGTGCTGAGACAGAATTGAAACAACTGAAAGCCAAGATTAGCCACTGTGAAAAGGAACTGAAGGAAAAATCAAATCAATTAAGTTCAAAACGTGAAGAAGCTAATGCTGTCGTAAGAGAGCTCAACTCCAGACAAAAAGATGTGGAGAATATTAGAACGGAGTTGGAGTCTCTTTCATATAAAGAGGGTGAGATGGAGAATTTACAAAAGGAGCGTATGACCGAGATGGACTGTGTGCAAAAGTGGAAGGATGAAATACGCAATCTTTCAGCTTACCTGGCAAATGTTGAATTTACATATCGTGATCCTGTCACGAACTTTGATAGGTCAAAGGTGAAAGGTGTTGTTGCAAAACTCATCAAAGTAAAGGATAGGTCCACAATGACTGCCCTAGAGGTTACAGCTGCTGGAAAGTTGTATAATGTTGTTGTTGACACAGAAAATACTGGAAAGCAACTACTACAAAATGGAAATCTTAGAAGAAGAGTGACAATTATACCTCTGAACAAAATACAATCCCATCCCGTTCCCTCAAGAGTTCAACAAGCTGCTATTAGACTGGTGGGGAAGGGGAATGCGGAAGTAGCCCTTTCTTTGGTTGGTTATGAGGAAGAATTAAAGACTGCAATGGAATATGTATTTGGTTCAACCTTTGTTTGCAAAACCATTGATGCTGCAAAGGAGGTGGCATTTAATAGGGATATTTACACTACAAGTGTCACTCTTGAAGGAGATATATTTCAGCCAAGGGGTCTTCTGACTGGTGGAAGCAGAAAGGGAAGTGGTGATCTTTTGGGACGACTTCATGCTTTGGCTGAAGCTGAGTCAAAACTTTCAGTGCATCAAAGAAGGTTGTCAGAGGTCGAAGCAAAGATCTCAAAGCTTCTTCCACTTCAGAAAAAATTTATAGATCTCAAAGCACAATTAGAACTGAAGTTGTATGATCTTTCACTGTTTCAGAGCAGAGCTGAGCAAAATGAGCATCATAAGCTTGGAGAATTAGTGAAGAAGATTGAGCAAGAGCTAAATGAAGCAAAATTGACAGTCAAGGACAAACAATTTTTGTATGAGGACTGCGTCAAAACTGTTTCATCTCTTGAGAAATCAATAAAGGACCATGACAATAGCAGAGAAAGTAGACTAAAAGGATTGGAGAAAAAGATAAAATCTATAAAATCTCAAATGCAATCATCTTTAAAAGATCTGAAGGGGCATGATAGTGAAAAGGAGAGACTTGTAATGGAAATGGAAGCTGTTATCCAGGAGCAAGCATCGTTGGAGAATCAGTTAGCATCATTGGGAACACTGATTAGCAATCTTGCCTCAGAAGTAGAAGAACAAAAATCCACAGTTGTTGCAGCACGGAATAATCTTGATCAAGTTCAGTCAGAGTTGAAATCAGTTCGCCTGAAAATGAAAGAACGTGATAAGGAAATAAGTGCTATTATTAAAGAGCAACAAAAGGTTGAACATAAAATTACCGAGAATAATCTAGAAAGGAAGAGGATGGAAAATGAGGTAAAACGAATGGAGATGGAACAGAAAGACTGCTCTGTTAGAGTAGATAAATTAATTGAGAAGCATGCTTGGATTGCTTCTGAAAAACAATTGTTTGGTCGAAGTGGGACTGATTATGATTTTTCTTCCTGTGATCCAAGTAAATCAAGGGAAGAACTTGAGAAGCTTCAGGCTGAGCAATCTGGGCTTGAGAAAAGGGTGAACAAGAAAGTGATGGCAATGTTTGAGAAGGCAGAGGACGAGTACAATGATTTGATGTCCAAAAAAAACATAATTGAGAATGACAAGTCCAAAATCAAGAAAGTAATCGAAGAGCTAGATGAGAAGAAGAAGGAGACACTAAATGTTACCTGGATCAAAGTGAATACTGACTTTGGGTCCATCTTTTCTACACTATTACCGGGAACAATGGCTAAGCTAGAACCTCCAGAAGGATGCAGCTTCCTTGACGGTCTTGAGGTTCGTGTTGCATTTGGAAGTGTGTGGAAGCAGTCGTTGTCTGAATTAAGTGGAGGTCAGCGATCACTGCTTGCACTTTCTCTGATTCTGGCACTGCTTCTGTTCAAACCTGCTCCACTTTACATCCTTGACGAGGTTGATGCAGCTCTTGATTTGAGCCACACACAAAACATAGGGAGAATGATAAAGGCTCACTTTCCGCACTCTCAGTTTATTGTGGTTTCCTTGAAGGAAGGCATGTTCAATAACGCAAATGTTCTTTTCCGGACAAAATTTGTGGATGGTGTTTCAACTGTTCAGCGAACAGTTGCTTCTAAACAAAGCAAATGA 3804 0.4151 MGFGHFHEDNFNPSHASCFRLLTFQDGSKSDHGPHQAFSTELQGPTRESKAKPPKNLIFIIQIQILRSLHSLFLLQPNAAVFRSDLRTLFAMHIKEVCLEGFKSYATRTVVPGFDPFFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQAGITKATVSILFDNSDRSRSPLGYEGHSEITVTRQIVVGGRNKYLINGKLAQPSQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILSMLEEAAGTRMYETKKEAALKTLEKKQSKVDEINKLLDQEILPALEKLRKEKTQYMQWANGNADLDRLRRFCVAYDYVQAERIKDNAASEVEEVKAKIAEIDDVAKTNQVEIKEMEVKIAQLTVEKEASMGGEMKSLSEKVDVLSQNLVRETSVLNNKEDTLRSEEANKANIVKNIEELKQSVEEKASSVKKAEEGASDLKNTVDELTKSLEEHEKEYQGVLAGKSSGNEEKCLEDQLRDAKVAVGSAETELKQLKAKISHCEKELKEKSNQLSSKREEANAVVRELNSRQKDVENIRTELESLSYKEGEMENLQKERMTEMDCVQKWKDEIRNLSAYLANVEFTYRDPVTNFDRSKVKGVVAKLIKVKDRSTMTALEVTAAGKLYNVVVDTENTGKQLLQNGNLRRRVTIIPLNKIQSHPVPSRVQQAAIRLVGKGNAEVALSLVGYEEELKTAMEYVFGSTFVCKTIDAAKEVAFNRDIYTTSVTLEGDIFQPRGLLTGGSRKGSGDLLGRLHALAEAESKLSVHQRRLSEVEAKISKLLPLQKKFIDLKAQLELKLYDLSLFQSRAEQNEHHKLGELVKKIEQELNEAKLTVKDKQFLYEDCVKTVSSLEKSIKDHDNSRESRLKGLEKKIKSIKSQMQSSLKDLKGHDSEKERLVMEMEAVIQEQASLENQLASLGTLISNLASEVEEQKSTVVAARNNLDQVQSELKSVRLKMKERDKEISAIIKEQQKVEHKITENNLERKRMENEVKRMEMEQKDCSVRVDKLIEKHAWIASEKQLFGRSGTDYDFSSCDPSKSREELEKLQAEQSGLEKRVNKKVMAMFEKAEDEYNDLMSKKNIIENDKSKIKKVIEELDEKKKETLNVTWIKVNTDFGSIFSTLLPGTMAKLEPPEGCSFLDGLEVRVAFGSVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKAHFPHSQFIVVSLKEGMFNNANVLFRTKFVDGVSTVQRTVASKQSK 1267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g02224 1267 Coils Coil 936 977 - -
Phco9g02224 1267 Coils Coil 1073 1117 - -
Phco9g02224 1267 FunFam Structural maintenance of chromosomes 2 1086 1265 - -
Phco9g02224 1267 SUPERFAMILY Smc hinge domain 575 777 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Phco9g02224 1267 Pfam RecF/RecN/SMC N terminal domain 932 1252 IPR003395 -
Phco9g02224 1267 Pfam RecF/RecN/SMC N terminal domain 93 474 IPR003395 -
Phco9g02224 1267 Gene3D - 502 681 - -
Phco9g02224 1267 FunFam Structural maintenance of chromosomes 2 609 672 - -
Phco9g02224 1267 Coils Coil 827 847 - -
Phco9g02224 1267 Coils Coil 908 928 - -
Phco9g02224 1267 FunFam Structural maintenance of chromosomes 2 92 293 - -
Phco9g02224 1267 Coils Coil 269 289 - -
Phco9g02224 1267 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 92 1249 IPR027417 -
Phco9g02224 1267 SMART SMC_hinge_2 609 729 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Phco9g02224 1267 Gene3D - 1086 1266 IPR027417 -
Phco9g02224 1267 CDD ABC_SMC2_euk 92 247 IPR027120 GO:0005524|GO:0016887
Phco9g02224 1267 Pfam SMC proteins Flexible Hinge Domain 609 729 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Phco9g02224 1267 Gene3D - 682 757 - -
Phco9g02224 1267 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 3 92 1265 - -
Phco9g02224 1267 MobiDBLite consensus disorder prediction 30 51 - -
Phco9g02224 1267 Coils Coil 880 900 - -
Phco9g02224 1267 MobiDBLite consensus disorder prediction 30 46 - -
Phco9g02224 1267 Coils Coil 491 557 - -
Phco9g02224 1267 Coils Coil 983 1019 - -
Phco9g02224 1267 Coils Coil 408 470 - -
Phco9g02224 1267 Gene3D - 92 293 IPR027417 -
Phco9g02224 1267 Coils Coil 770 790 - -
Phco9g02224 1267 Coils Coil 330 378 - -
Phco9g02224 1267 PIRSF SMC 91 1247 IPR024704 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g02224 Phco-Chr9 47596978 47607865 Dispersed