Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g02222 ATGGGAAAGAAGAACAAAGTGAAGGAGAATGGAGGCAAAGAGCATTGCTCCTCCACACTTTTTGTCTCCAACTTGCCCTATTCCTTTTCCAATTCTCAGTTGGAGGAGACGTTCAGTGAGATTGGACCTGTGAGGCGTTGCTTCATGGTCACACAGAAAGGGTCAGCACAGCATCGTGGTTTCGGCTATGTCCAATTTGCTGTTGAGGAAGACGCCAACCGTGCTATTGAGCTGAAGAATGGTCTATCTGTTGAAGGCCGTAAAATTGGAGTGAAGAATGCAATGCCTCGTCCTCCCCGTGAGGAACGAAAGTCGAAACCAAATAAAGCAGGAACACCAGATGATCTTGTAAAACCAAAAGATGATGATGTGAAAGACTGCATATCATCTGGAACAGAGAAGCATGTTTCAGTTTTGAAGGAAGAAGTACAAGTCACAACAAGTAAACAAAAAAGCTCTAAGAAGCCCATGGAAACGAAAAAATCAGCTCTTTGTAATGATGTAGCAGATGATGGTAGTTGCTCAGAAAAACAGAGGGTTGCTAGAACTGTTATTTTTGGTGGCCTTATAGACTCTGATATGGCTGAAGAAGTTCACAGCCAAGCCAGAGAGATTGGCACTGTGTGTTCTGTTAACTACCCTCTTTCAAGGAAAGATCTCGAGCAACATGGTCTCATGCAAGATGGCTGTACCATGGATGCTACGTCTGTACTTTATACAAGTGTAAAATCAGCCCGAGCTTCTGTTGCAAAGTTGCATAAAAAAGTGATAAGAGGGGAAACAGTTTGGGCCCGGCAACTGGGTGGAGAGGGCTCCAAGACTCAGAAATGGAAGCTTATTGTCAGAAACCTTCCTTTCAAGGCGAAAAATACTGAAATAAGAGATATGTTTTCATCTGCTGGATATGTGTGGGACGTATTTATTCCACAAAAGTCAGACACAGGTCTGTCTAAGGGCTTTGCATTTGTAAAATTCACCTGCAAACAAGATGCCGAAAATGCCATTCAAAAGCTGAATGGATCAAAGTTTGCAAAACGAGTCATAGCTGTTGATTGGGCTGTTCCAAAGAAGATATTTAGTAGTGATATGAATGATCCTCGTGCATCAGAGAAAGGACAACAAAACTTGAGTGATGAAGATAGTGACGAGGAAGATGTCGAGCTTGTTGATAAAATATCTGGTCAAGGAGATGATATTGATACGAACAACCCTAGTGCCATGGAGGAAGAGGGAGCTCCTCCTGAAGATAATTTTGACGAGGAAGCAGACATTGCAAGAAAGGTTCTTAACAACTTGCTTGGATCCTCAAGCAAAGGAACATCTGAAAACAATGATTCTATGTTGTCCAAAGAAAATAAAGAGTCAAGATCTGATGAAGTTTTTAAGGATGCAGATGGAAAAGTATCCGATGATTCTGAAAAGGTTTCAGGTGCTTCTAATCCTGAAATTTCCAGCAGAAACAACTTATCAAATCCTAAGGAAACAGAAGAAGATTTGCAGAGAACAGTTTTTATAACTAATCTTCCCTTTGAATGTGATAACGAAGAAGTAAAACAACGATTTTCTGGCTTTGGGGAAGTAGAATACTTTGCTCCTGTTCTTCACCAAGTTACCAAGCGACCAAGAGGAACTGGTTTTCTAAAGTTTAAAACTGTAGAAGCAGCTAATACTGCAATTTCAACTGCTATTGCTGCTTCTGGGACAGGTATTTTACTTCAGGGTAGACCATTGAAAGTTTTAAAGGCTTTGGATAAGAAATCTGCACATGACAAGGAACTGGAGAAAGCAAAAAATGAGGTTCATGACCACCGGAATCTTTATTTGGCAAAGGAGGGACTTATTCTTGAGGGAACTACAGCCGCTGAAGGGGTTTCAGCCAGTGATATGTTAAAACGCCAAGAGTTGGAGAGGAAAAAGAAGACAAAGCTTCAATCTCCGAATTTTCATGTTTCGAGAACTAGACTCGTGGTCTACAACTTACCCAAGTCAATGCATGAGAAAGAACTCAAGAAGCTTTGCATTGATGCAGTCATCTCTAGAGCTACCAAGCAAAAACCTGTAATTCGGCAGATAAAGTTTTTGAAAAATGATAAGAACGGAAAGGTAGCTCAAGAACGCTATTCTAGGGGAGTTGCCTTTATTGAATTTTCTGAGCATCAGCATGCTCTTGTGGCTCTGAGAGTTCTCAACAATAATCCTGAAACATTTGGTCCTGAACATCGACCAATTGTGGAGTTTGCTCTTGATAATGTTCAAACACTTAAACTTCGGAAGGCAAAGCTACAACAATTTCAGCAGCAGGCTCCTCAAGATGACAACAATGCCAAGGGAAATGACAAACCTGGCAACCAAGAAGTTCACACACAGGACAGAAAACGAAAGTCTAGGGAGCATGGTGAACCGGCAAAGGAAACAGCACTGAATACAAATGGTGAATCAGGTGGTACACTGGCAAATGGAAAATCCCCTCAAGGACAAAAGTTCAAAAGACAGAAAGGCAACAACAAGACCAAAAGGGTACTGAAAGAAAATCCAGAAGCCTTGTCCATGAAGCCAAAGAATAACCAAAATGGCCAGAAAAGTGGTGGTGCAGCAGTTGAAGATCAAAACACTGCCACTGTTACTGCCAGTGCCACTAACAGAAGAAAATCAGGAAACAAAGGTGATGATACTGGATTTAGAAAAAGAAAGATGCAGAATCAAGAACAAGAAGCAGGCCATAAGGTGGTTTCTAAGAAACGGCCTAAGAAGAATAAAGATTCAGTAGGAAAGGATGTAGTTGACAAGCTTGACATGCTTATAGAACAATATAGATCCAAGTTCTCAGACAAGGGTTCCCAAGAGAATGCAGAGAAAAAACCTTCAAAACAGCTTAGGAAATGGTTCCAATCATAG 2895 0.4114 MGKKNKVKENGGKEHCSSTLFVSNLPYSFSNSQLEETFSEIGPVRRCFMVTQKGSAQHRGFGYVQFAVEEDANRAIELKNGLSVEGRKIGVKNAMPRPPREERKSKPNKAGTPDDLVKPKDDDVKDCISSGTEKHVSVLKEEVQVTTSKQKSSKKPMETKKSALCNDVADDGSCSEKQRVARTVIFGGLIDSDMAEEVHSQAREIGTVCSVNYPLSRKDLEQHGLMQDGCTMDATSVLYTSVKSARASVAKLHKKVIRGETVWARQLGGEGSKTQKWKLIVRNLPFKAKNTEIRDMFSSAGYVWDVFIPQKSDTGLSKGFAFVKFTCKQDAENAIQKLNGSKFAKRVIAVDWAVPKKIFSSDMNDPRASEKGQQNLSDEDSDEEDVELVDKISGQGDDIDTNNPSAMEEEGAPPEDNFDEEADIARKVLNNLLGSSSKGTSENNDSMLSKENKESRSDEVFKDADGKVSDDSEKVSGASNPEISSRNNLSNPKETEEDLQRTVFITNLPFECDNEEVKQRFSGFGEVEYFAPVLHQVTKRPRGTGFLKFKTVEAANTAISTAIAASGTGILLQGRPLKVLKALDKKSAHDKELEKAKNEVHDHRNLYLAKEGLILEGTTAAEGVSASDMLKRQELERKKKTKLQSPNFHVSRTRLVVYNLPKSMHEKELKKLCIDAVISRATKQKPVIRQIKFLKNDKNGKVAQERYSRGVAFIEFSEHQHALVALRVLNNNPETFGPEHRPIVEFALDNVQTLKLRKAKLQQFQQQAPQDDNNAKGNDKPGNQEVHTQDRKRKSREHGEPAKETALNTNGESGGTLANGKSPQGQKFKRQKGNNKTKRVLKENPEALSMKPKNNQNGQKSGGAAVEDQNTATVTASATNRRKSGNKGDDTGFRKRKMQNQEQEAGHKVVSKKRPKKNKDSVGKDVVDKLDMLIEQYRSKFSDKGSQENAEKKPSKQLRKWFQS 964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g02222 964 MobiDBLite consensus disorder prediction 94 123 - -
Phco9g02222 964 Coils Coil 579 606 - -
Phco9g02222 964 FunFam Putative RNA binding ribonucleoprotein 430 598 - -
Phco9g02222 964 SUPERFAMILY RNA-binding domain, RBD 644 751 IPR035979 GO:0003676
Phco9g02222 964 MobiDBLite consensus disorder prediction 783 803 - -
Phco9g02222 964 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 268 389 - -
Phco9g02222 964 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 501 584 IPR000504 GO:0003723
Phco9g02222 964 MobiDBLite consensus disorder prediction 432 446 - -
Phco9g02222 964 MobiDBLite consensus disorder prediction 361 417 - -
Phco9g02222 964 MobiDBLite consensus disorder prediction 473 490 - -
Phco9g02222 964 Gene3D - 434 598 IPR012677 -
Phco9g02222 964 Gene3D - 2 109 IPR012677 -
Phco9g02222 964 MobiDBLite consensus disorder prediction 432 500 - -
Phco9g02222 964 CDD RRM1_RBM28_like 19 97 - -
Phco9g02222 964 FunFam RNA-binding motif protein 28 652 747 - -
Phco9g02222 964 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 653 761 IPR000504 GO:0003723
Phco9g02222 964 SUPERFAMILY RNA-binding domain, RBD 501 673 IPR035979 GO:0003676
Phco9g02222 964 CDD RRM3_RBM28_like 501 582 - -
Phco9g02222 964 Gene3D - 652 747 IPR012677 -
Phco9g02222 964 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 277 355 IPR000504 GO:0003723
Phco9g02222 964 MobiDBLite consensus disorder prediction 883 909 - -
Phco9g02222 964 CDD RRM2_RBM28_like 278 354 - -
Phco9g02222 964 SMART rrm1_1 278 351 IPR000504 GO:0003723
Phco9g02222 964 SMART rrm1_1 502 580 IPR000504 GO:0003723
Phco9g02222 964 SMART rrm1_1 654 745 IPR000504 GO:0003723
Phco9g02222 964 SMART rrm1_1 19 92 IPR000504 GO:0003723
Phco9g02222 964 MobiDBLite consensus disorder prediction 806 830 - -
Phco9g02222 964 MobiDBLite consensus disorder prediction 849 882 - -
Phco9g02222 964 PANTHER RNA-BINDING MOTIF PROTEIN 14B 15 859 - -
Phco9g02222 964 MobiDBLite consensus disorder prediction 916 958 - -
Phco9g02222 964 Gene3D - 265 387 IPR012677 -
Phco9g02222 964 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 279 348 IPR000504 GO:0003723
Phco9g02222 964 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 89 IPR000504 GO:0003723
Phco9g02222 964 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 503 560 IPR000504 GO:0003723
Phco9g02222 964 CDD RRM4_RBM28_like 653 750 - -
Phco9g02222 964 MobiDBLite consensus disorder prediction 447 472 - -
Phco9g02222 964 SUPERFAMILY RNA-binding domain, RBD 274 360 IPR035979 GO:0003676
Phco9g02222 964 FunFam - 2 128 - -
Phco9g02222 964 SUPERFAMILY RNA-binding domain, RBD 18 263 IPR035979 GO:0003676
Phco9g02222 964 MobiDBLite consensus disorder prediction 762 964 - -
Phco9g02222 964 MobiDBLite consensus disorder prediction 89 123 - -
Phco9g02222 964 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 96 IPR000504 GO:0003723
Phco9g02222 964 MobiDBLite consensus disorder prediction 762 782 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g02222 Phco-Chr9 47582688 47590697 Dispersed/Transposed