Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g02221 ATGGAATCCTCTGTTGATGTGTCATCAGCTAAACGCTGTTGTTCAACCGGATTTTCCCCTGGCCCTGACAGAGACAAAAGACAGAAGTTATCAGATGTCGCTGACCATACGAATCCATTTGCAATTTCGGATGTTGTGGTTCGTATAGAGCATGGGAAATTTGGAAGTGTCACAAAAGAGATAGAGGCTCTTGTAGCCCGAAAAATGCAGATACTTGGACCTTACTTTGCAAAGTATCCCGGACTTGTTAATCAATTGATCAATGTGGTAACTGACCACGATGAAGACACTGCTAAGTTCGAAGATCAACTAGACAATGGTTTGACATACCATAATGTCATAGATTCGGAGGGGGAAAACACCGAGACGGATGTTAGTGCAGCTCCAATTCCTGTTATCCACATTGATTCAGATGTGGAAGATGATGGAGATAAAAGATCTATTGTTCCATTTCATGAAGCTTCAGAAGAGGAAGATGATAGACATAATAAATCTATTGTTCCTTTTCATGAAGCTTCCAAAGAGGAAGATGACAGACATAATAAATCTATTGTTCCATTTCATGAAGCTTCAAAAGAGGAAGATGATAGACAACAAAAATCTATTGTGCCATTTCATGGAGCTTCAGAAGAGGAAGACGATACACACAAAAAATCAATTGTTCCGTTTCATGAAATTGTGTTGCCGAGACAAGTTGCACCGTCTCCTGTTGTGATGAAGACAACTAGGCAGCGCACTCCCATTCGTAACCATGGCAAAAGTAAAGATCTGAAAATTGAGACAAGTATGACGGATAAAGGTACCACCAGAGATAAAGGTGTTTATCTCGGTGTAGAGGAGCAAGAGGATCTTCAGGTTGACACCGCAGATAATGAGGGCCTAGAAGATATTTGGAAGGAGATGTCAATGGCAATGGAGTGTTCCAAAGTTGTTTCCGCGAATCCTCTGCCAGATGATGAAGTAGGAAGAGACCATGAAGAAGCAGAAAGAGATGAGGACTGCGATCATTCTTTTATTTTAAAAGATGATATTGGTTATGTTTGTCGGGTTTGTGGCATTATTGACCGAAGAATTGAAACCATATTTGAGTTTCAGTACAAGGTTAAACGGAGCACAAGGACTTATGCCTCTGACTCTCGTAATACCAAAGCAAAAGCAGATGAATTTGCAATTAATGTTGCTGAAGATGATCTCCTGGTAACTGAATTCTCAGCACATCCTAGACACACGAAACAGATGAAACCTCATCAAGTTGACGGATTCAATTTTCTTGTTAGAAATCTTGCGGGTGATCGTCCTGGTGGCTGCATCTTAGCCCATGCTCCAGGATCAGGGAAAACATTCATGATAATCAGTTTCATGCAAAGTTTTCTAGGCAAGTTTCCGAATGCAAGACCATTGGTGGTGCTTCCAAAGGGAATATTGTCAACATGGAAAAAGGAGTTTCAAACGTGGCAAGTGGAGGACATACCTCTATATGACTTTTATACAGTGAAGGCAGATAGTAGAAGTCAACAACTGGAAGTGTTGAAGCTATGGGTGGAGAAGAAAAGTATCCTTTTCTTAGGATACAAACAGTTTTCCTCTATCGTCTGTGATAATGGGACCAACAGTACATCTTTATCTTGCCAAGAGATTTTACTCAGGGTTCCTTCAATTCTTATTTTAGACGAGGGGCATAATCCAAGGAATGAAAACACAGATATGGTTCAATCCCTTGCAAAAGTTCACACTACTAGAAAAGTTGTTCTGTCAGGAACACTTTACCAAAATCATGTCAGGGAGGTGTTTAACATTCTAAATCTTGTTCGTCCAAAATTTTTGAAGATGGAAACATCTAAGCCTATCGTCAGGCGCATTTATAGTAGAGTTCATATACCAGGTGTGAGAAGCTTTTATGATCTTGTGGAAAACACTTTGAAGGGCACAGATTTTAAAGGGAAAGTGGCCGTCATACGAGATTTGCGCGAGATGACAAACAATGTCCTTCATTATTATAAAGGGGATTTTCTTGAAGAGCTTCCTGGTCTCGTTGATTTTACTGTGGTTCTCAATCTTAGCCCTAAACAAAAGCTAGACATTGAAAAATTAAAGAAGTCATCTCGAAAGTTCAAGATATCTTCTGTAGGCAGTGCTCTCTATTTGCACCCTAAACTGAAATCTTTAGCTGAAAAATGTGCAGAAAATAATATATCTGATGATATAATTGATGCTCTGATAGAAAAATCAGATGCCAGAGAAGGTGTGAAGTCCAAATTCTTCTGGAACATGCTAAATTTGTGTGAATCAACCGGAGAGAAACTTCTAGTATTTAGTCAATACTTGCTTCCTTTGAAATATTTAGAAAGGTTAACCGTGCAAAGTAAAGGGTGGAGTCTAGGGAGGGAAATATTTGTAATCTCAGGAGAATCAAGCTATGAGCAGCGAGAATGGTCCATGGAAAAATTTAACAATTCTCCTAATGCCAAAGTCTTCTTTGGCTCCATTAAGGCTTGTGGAGAGGGCATATCATTGGTCGGGGCATCACGCATAGTTATTTTGGACGTTCATCTTAATCCTTCAGTTACTCGCCAAGCTATTGGTCGAGCATTCAGACCGGGCCAGCAGAAGAAAGTCTTTGTGTATCGATTGGTGTCTGCAGATTCTCCAGAAGAGGAGGATAACAACACTTGTTTGAAGAAAGAATTAATTTCAAAAATGTGGTTTGAATGGAACGAGTATTGTGGTGATCGAGCATTTGAAGTTGAGGAAGTTCTTCTCAAAGACTGTAGCGATCTTTTTCTTGAGAGTCCATTACTAGGAGAAGATGTAAAAGCTCTGTACAAAAGGTAG 2832 0.3976 MESSVDVSSAKRCCSTGFSPGPDRDKRQKLSDVADHTNPFAISDVVVRIEHGKFGSVTKEIEALVARKMQILGPYFAKYPGLVNQLINVVTDHDEDTAKFEDQLDNGLTYHNVIDSEGENTETDVSAAPIPVIHIDSDVEDDGDKRSIVPFHEASEEEDDRHNKSIVPFHEASKEEDDRHNKSIVPFHEASKEEDDRQQKSIVPFHGASEEEDDTHKKSIVPFHEIVLPRQVAPSPVVMKTTRQRTPIRNHGKSKDLKIETSMTDKGTTRDKGVYLGVEEQEDLQVDTADNEGLEDIWKEMSMAMECSKVVSANPLPDDEVGRDHEEAERDEDCDHSFILKDDIGYVCRVCGIIDRRIETIFEFQYKVKRSTRTYASDSRNTKAKADEFAINVAEDDLLVTEFSAHPRHTKQMKPHQVDGFNFLVRNLAGDRPGGCILAHAPGSGKTFMIISFMQSFLGKFPNARPLVVLPKGILSTWKKEFQTWQVEDIPLYDFYTVKADSRSQQLEVLKLWVEKKSILFLGYKQFSSIVCDNGTNSTSLSCQEILLRVPSILILDEGHNPRNENTDMVQSLAKVHTTRKVVLSGTLYQNHVREVFNILNLVRPKFLKMETSKPIVRRIYSRVHIPGVRSFYDLVENTLKGTDFKGKVAVIRDLREMTNNVLHYYKGDFLEELPGLVDFTVVLNLSPKQKLDIEKLKKSSRKFKISSVGSALYLHPKLKSLAEKCAENNISDDIIDALIEKSDAREGVKSKFFWNMLNLCESTGEKLLVFSQYLLPLKYLERLTVQSKGWSLGREIFVISGESSYEQREWSMEKFNNSPNAKVFFGSIKACGEGISLVGASRIVILDVHLNPSVTRQAIGRAFRPGQQKKVFVYRLVSADSPEEEDNNTCLKKELISKMWFEWNEYCGDRAFEVEEVLLKDCSDLFLESPLLGEDVKALYKR 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g02221 943 MobiDBLite consensus disorder prediction 1 15 - -
Phco9g02221 943 Pfam Helicase conserved C-terminal domain 761 866 IPR001650 -
Phco9g02221 943 Gene3D - 379 625 IPR038718 -
Phco9g02221 943 CDD SF2_C_SNF 756 878 - -
Phco9g02221 943 Pfam SNF2-related domain 433 688 IPR000330 GO:0005524|GO:0140658
Phco9g02221 943 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 41 942 IPR044567 GO:0080188
Phco9g02221 943 SMART ultradead3 409 619 IPR014001 -
Phco9g02221 943 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 756 919 IPR001650 -
Phco9g02221 943 Gene3D - 675 930 IPR027417 -
Phco9g02221 943 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 427 606 IPR014001 -
Phco9g02221 943 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 387 608 IPR027417 -
Phco9g02221 943 SMART helicmild6 779 867 IPR001650 -
Phco9g02221 943 MobiDBLite consensus disorder prediction 1 28 - -
Phco9g02221 943 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 552 905 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g02221 Phco-Chr9 47573095 47578658 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Phco9g02221 SNF2_N 4.6e-19 CL0023