Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g02219 ATGATTGCAATTTTTTTTGTCAGTCTACAGAATAAACTTAGAGCCTCATCAAATTCGTCACTCACTCTTTTTTTCAACTGGCTGATGGAGCCCTCTGTTGATGTTGTGTCTAGTGCAAAACGCCCTCGACCAATGGGATTTTCTTCTGACCCGGGTGGAGACAAAAGACTGAAATTTTCAAGTTATAGCCTGCCATACTCAACACATGATAAGACTTCATATGTTGTTGATTACAGCAATCCATTTGCAATATCTGATGTTCTGGATAGTTTAGAGAGTGGAAAATTTGGAAGTGTCACAAAGGACATAGAGGACCTTATAGCCCAAAAAATGCAAATATTGGGCCCTTACTTTGTTAAATATCCCATTCTAGTGGATCAATGGGTGAAAGCGGTAATGAAACATGATGAAGAAACTCCTAAGTTGGAAAATCAACTAGTTACTGTGTGGACGCATCAAAATGTCATAGATCTGGAGGGGGAACACATCAGAAAGGATGTCCCTGCAACACAAAATCATGTTGTGATTATTGATTCAGATGAGGAAGATGATAGAGATGAAAAATCTATGGTCCCATTTCATGAAGTTGTGTTGCCGAAACTAGTTGCACCGTCTCCTGCATTGAAGATACTTGGGTATCAACCTCCCATTTCTTACCCGGGAGAAAGAGATCTAAAAATTGAGACACGTATTGAGGATAAACCTAACAACACTCAGAACGATAAAGGTGTTTATGTTGGTGTACAAGAAGAGGAAGATGAGGTTGATACTGAAGATGATGGTCTAGAAGATATTTGGAAGGAGATGTCAATGGCTATAGAATGTTCCAAAGATGTTTCGGTTGATCCTCAGCCAGATGAAGAAGCAGAAGAAGAAGATGATGATGATGATGATTGTGATCACTCTTTTTTCTTAAAAGATGATCTTGGCTATGTTTGTCGCGTTTGTGGGGTTATTGAACGAGGAATTGAAACCATATTTGAGTTTCAGTACAAGGTTAAACGAAGCACAAGAACTTATGCGTCTGATTCATGGAATACCAAGAAAACAGATGTATTTGGAATTAATGTTGTTGAAGATGACCTCATAGTTACTGAAATCCCAGCGCACCCTAGACACATGAAACAGATGAAACCCCATCAAGTTGAAGGATTCAATTTTCTTGGTAGAAATCTTGCAGGTGACCATCCTGGTGGCTGCATCTTAGCCCATGCTCCAGGATCTGGGAAAACATTCATGATAATCAGTTTCATGCAAAGTTTTCTAGGCAAGTATCCGAATGCAAGACCCTTAGTGGTGCTTCCTAAGGGAATATTGTCAACATGGAAAAAGGAGTTTCAAATATGGCAGGTGGAGAACATACCTCTATATGACTTCTACACAGTGAAGGCAGACAGCAGAAGTCAACAACTGGAAGTGCTGAAGCAATGGATGGAGCAGAAGAGTATTCTTTTCCTAGGATACAAACAGTTCTCCTCTATTGTCTGTGATAATGGGAACAATAGTACATCATTATCTTGCCAAGATATTTTGCTCAAGGTTCCTTCAATTCTTATTTTAGATGAGGGACACAATCCTAGGAATGAAAACACAGATATGGTGCAGTCCCTTGCAAAAGTTCAAACGCCTAGAAAAGTTGTACTGTCAGGAACCCTTTATCAAAATCATGTCAGGGAGGTGTTTAACATTTTAAATCTTGTTCGGCCAAAATTTTTGAAGATGGAAACATCAAAGCCTATTGTGAGGCGCATTGAAAGTAGAGTTCATATACCAGGAATGAGAAACTTCTATGATTTAGTTGAAAACACTTTGCAGAAGGACACTGATTTTAAAAGGAAAATAGCTGTTATACAAGATTTGCGTGAGATGACGAGCAAGGTACTTCACTATTATAAAGGAGATTTTCTTGATGAGCTTCCTGGTCTTGTTGATTTTACCGTGGTGCTCACGCTTAGCCCTAGACAGAAGCCTGAAGTAGGGAAAATAAAAAAGCTATCTAGCAGAAAGTTCAGGATATCTTCTGTAGGAAGTGCTGTCTATCTGCATCCTAAACTGAAACCACTAGCAGAAAAGTGTGGTGAAAATTCTATATCTGATCATGTAATGGATGATTTGGTAGATAAACTGGATATTAGAGATGGTGTGAAGTCAAAATTTTATTACAACATACTAAATCTGTGTGAATCAGCAGGGGAGAAGCTTCTGGTTTTCAGTCAGTATCTGTTACCTTTGAAATATTTAGAAAGGTTGACTATGAAGTGGAAAGGCTGGAGTCTTGGAAAAGAAATTTTTGTAATCTCAGGAGAATCAAGCTCTGAGCACCGAGAATGGTCCATGGAAAAATTTAACAATTCTCGTGAAGCCAAAGTCTTCTTTGGCTCAATCAAGGCATGTGGAGAGGGTATATCACTGGTTGGGGCCTCTCGCATAATTATCTTGGACGTTCATCTCAATCCATCAGTTACGCGTCAAGCTATAGGTCGTGCATTCAGACCCGGCCAGACGAAGAAGGTTTTTGTGTATCGTTTAGTATCTGCTGATTCTCCGGAAGAGGAAGACCACCATGTTTGTTTCAAGAAAGAATTAATTTCAAAAATGTGGTTTGAATGGAATGAGTATTGTGGTGATCGAGCTTTTGAAGTTGAGGCAGTTGAGGTGAAAGAGTGTGGTGATGAATTTCTTGAAAGTCCACTGTTAGGGGAGGATGTAAAAGCTTTATATAAAAGGTGGTCAAGTGAATCAGAGCCTGCTTATTCATATAAACAGAACAAGAGAATTTGA 2781 0.3912 MIAIFFVSLQNKLRASSNSSLTLFFNWLMEPSVDVVSSAKRPRPMGFSSDPGGDKRLKFSSYSLPYSTHDKTSYVVDYSNPFAISDVLDSLESGKFGSVTKDIEDLIAQKMQILGPYFVKYPILVDQWVKAVMKHDEETPKLENQLVTVWTHQNVIDLEGEHIRKDVPATQNHVVIIDSDEEDDRDEKSMVPFHEVVLPKLVAPSPALKILGYQPPISYPGERDLKIETRIEDKPNNTQNDKGVYVGVQEEEDEVDTEDDGLEDIWKEMSMAIECSKDVSVDPQPDEEAEEEDDDDDDCDHSFFLKDDLGYVCRVCGVIERGIETIFEFQYKVKRSTRTYASDSWNTKKTDVFGINVVEDDLIVTEIPAHPRHMKQMKPHQVEGFNFLGRNLAGDHPGGCILAHAPGSGKTFMIISFMQSFLGKYPNARPLVVLPKGILSTWKKEFQIWQVENIPLYDFYTVKADSRSQQLEVLKQWMEQKSILFLGYKQFSSIVCDNGNNSTSLSCQDILLKVPSILILDEGHNPRNENTDMVQSLAKVQTPRKVVLSGTLYQNHVREVFNILNLVRPKFLKMETSKPIVRRIESRVHIPGMRNFYDLVENTLQKDTDFKRKIAVIQDLREMTSKVLHYYKGDFLDELPGLVDFTVVLTLSPRQKPEVGKIKKLSSRKFRISSVGSAVYLHPKLKPLAEKCGENSISDHVMDDLVDKLDIRDGVKSKFYYNILNLCESAGEKLLVFSQYLLPLKYLERLTMKWKGWSLGKEIFVISGESSSEHREWSMEKFNNSREAKVFFGSIKACGEGISLVGASRIIILDVHLNPSVTRQAIGRAFRPGQTKKVFVYRLVSADSPEEEDHHVCFKKELISKMWFEWNEYCGDRAFEVEAVEVKECGDEFLESPLLGEDVKALYKRWSSESEPAYSYKQNKRI 926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g02219 926 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 391 570 IPR014001 -
Phco9g02219 926 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 242 913 IPR044567 GO:0080188
Phco9g02219 926 Pfam SNF2-related domain 397 605 IPR000330 GO:0005524|GO:0140658
Phco9g02219 926 MobiDBLite consensus disorder prediction 284 299 - -
Phco9g02219 926 Gene3D - 346 591 IPR038718 -
Phco9g02219 926 SMART ultradead3 373 583 IPR014001 -
Phco9g02219 926 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 357 586 IPR027417 -
Phco9g02219 926 Pfam Helicase conserved C-terminal domain 723 832 IPR001650 -
Phco9g02219 926 MobiDBLite consensus disorder prediction 277 299 - -
Phco9g02219 926 Gene3D - 640 893 IPR027417 -
Phco9g02219 926 SMART helicmild6 748 833 IPR001650 -
Phco9g02219 926 CDD SF2_C_SNF 705 844 - -
Phco9g02219 926 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 516 871 IPR027417 -
Phco9g02219 926 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 722 885 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g02219 Phco-Chr9 47553462 47561621 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Phco9g02219 SNF2_N 5.1e-19 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g02219 9 47553462 47561621 Phco9g02219 9 47553462 47561621 ECH