Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g02215 ATGGGTGCCGTTTGTTGTGTTGCTGCCAAAGACAAAACTTTACAAAGTGCATCACCCAGTGAAATCATGCATCGGAATATTCGATATTCTCCGACATGGAACTTTAGGTGGGATCATCGAGGGCGTGTAGCTGGTGAAGATACTGCTGTAACTTGGTTTTCTAATGGTATTAGCAGGAATGATGGATTGGAGAATAAAAATGAACCCTCGTATGTATCCGAGGATGGAAGCCCGTTGCAGAATTATCAAAGGAGTAGATCCCAAAAATCCCCAGTCTCAGAAGGAACGGCTAGGAACCTGATAAATTCATCATCAGATCAAACTATTTCAAGGAATGTCTTGACAAATGAGAGCGTGGAACAGGCGAAGAGGTTGGCTGAATCATCAACAATATCATGCCCGTATCCCACAAAACCTCTACATTCATTGCCTTCTACTTCATCAATATCACCTCAGCCATACGATAGTCACCCATTTCCATCCAGCTCAACCACTTCAAGGTGGGCTTGCCATTCCACTGGAGAGCAACTATCTTGTCAAGTTTCTGATAGCCAAATCTTAGGATATAAGACGCCTAGCAACTCTTATGTATCTGAAGAGAGGCCAGTGTTTCCTTCGTGGAGCAATGAATCTGGTATGCCCTCCCATGGTGGGTCTTCAGGTAATTGGTCTAGGTCTGGCTTTTCTGAGCTGACAGGCAGTTCCCTCAAAGAAAGATGGTCATTTGATAGTGAGTCATTTGGTTTTAATTGTGAAAGGCTGGTTAGATCCAGTAGTCGGTTTTCAAATTCTCCAGTTGATTTCCAAGCATGTGGTGTTTGCTCAAAACTTTTAACTGAGAAGTCTTCTTGGGGAACCCAAAAGATAATTGCTAGTAATGACCTTTCAGTAGTTTCTGTCCTTATTTGTGGGCATGTTTATCATGCTGAATGCTTGGAGAGTTTGACACCTGAAGTCAACAAGTACGATCCACCTTGTCCAGTTTGCACTTTTGGCGAGAAATATACTCTTAAGTTGTCTGAAAAAGCTCTGAAAGCTGAAATGGATCTGAAGGCTAAAAATAAGAAATCAAGGAACCAAATTGTGGACAGTGATATTGACGATAATTCTGTTGTGCACGAACATTTTAGAGAAAAATGGCGTCAAGCTAGTAAAGGTCTTGGAATTGATTCTAGTTCTAGTGGGAGAAGCTCTAATGGGAAACCTTTTCTTAAGAGACATTTCTCATTTGGCACGAGGAGTTCCAAATCCATGCTAGATAATCAGTCAACCCCGAAGAAAGGCTTCTTTTGGGCAAAATCTAGTAGGGAATAA 1314 0.4178 MGAVCCVAAKDKTLQSASPSEIMHRNIRYSPTWNFRWDHRGRVAGEDTAVTWFSNGISRNDGLENKNEPSYVSEDGSPLQNYQRSRSQKSPVSEGTARNLINSSSDQTISRNVLTNESVEQAKRLAESSTISCPYPTKPLHSLPSTSSISPQPYDSHPFPSSSTTSRWACHSTGEQLSCQVSDSQILGYKTPSNSYVSEERPVFPSWSNESGMPSHGGSSGNWSRSGFSELTGSSLKERWSFDSESFGFNCERLVRSSSRFSNSPVDFQACGVCSKLLTEKSSWGTQKIIASNDLSVVSVLICGHVYHAECLESLTPEVNKYDPPCPVCTFGEKYTLKLSEKALKAEMDLKAKNKKSRNQIVDSDIDDNSVVHEHFREKWRQASKGLGIDSSSSGRSSNGKPFLKRHFSFGTRSSKSMLDNQSTPKKGFFWAKSSRE 437
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Phco9g02215 437 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 251 331 IPR013083 -
Phco9g02215 437 MobiDBLite consensus disorder prediction 129 167 - -
Phco9g02215 437 SMART ring_2 271 329 IPR001841 -
Phco9g02215 437 MobiDBLite consensus disorder prediction 57 98 - -
Phco9g02215 437 MobiDBLite consensus disorder prediction 386 400 - -
Phco9g02215 437 MobiDBLite consensus disorder prediction 386 437 - -
Phco9g02215 437 MobiDBLite consensus disorder prediction 410 429 - -
Phco9g02215 437 SUPERFAMILY RING/U-box 266 330 - -
Phco9g02215 437 CDD RING-H2 271 329 - -
Phco9g02215 437 ProSiteProfiles Zinc finger RING-type profile. 271 330 IPR001841 -
Phco9g02215 437 PANTHER EXPRESSED PROTEIN 1 334 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Phco9g02215 Phco-Chr9 47526435 47529058 Dispersed/Transposed
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g02215 9 47526435 47529058 Phco9g02215 9 47526435 47529058 ECH