Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g02212 ATGGCAACAATGGTGCCAAGTTATTCATCTCTTGTTCTTGTTTTGTTGTTTCTCTGCAACATTTCTCTCTCAAAAGCTCTTAAGGGATTCAGTGTGGAAATGATCCACCGTGATTCAGAAAAATCACCATTCTATCGTCCCACAGAGACTCATTCTCAACGAGTTGCTAATGCAATTCAGCGTTCCATTGCTCGTGCCAATCATCTCACAAAACCTTCTCTTTCCCTAGACACAGTTGAATCTGCAGTTATACCAAATTCAGGTGAATACCTAATGACCTATTCAGTTGGAACCCCACCATTCAAAATTCTTGGTATAGTTGACACTGGTAGCAACATTGTTTGGTTGCAATGTCAACCTTGCACAAACTGTTACAAACAAACCAGCCCTATATTCGACCCTTCACAATCCAAAACATACAAAACCCTACCTTGTTCTTCTAAGGCATGTACATCTTTGTCAAGTGCTTCTTGCTCAGAGGATGGACAAAAATGTGCATATACTATTAATTATGGTGATGGATCACATTCATCAGGAGATCTTAGTGTGGACACCCTAACCCTAGCTTCTACAGAAGGTTCTCCTGTCAGTTTTCCTAATATTGTTCTAGGGTGTGGAAATGACAATACTGGGACCTTTCAGGCCAATGGTTCTGGCATAGTTGGTCTTTCTGGTGGATCAAGCTCTCTTATATCTCAGTTGAGTTCAACAATTGAAGGAAAGTTTTCCTATTGTTTGTCAGGAATTTTTTCACAGTCTAGTTCACCTAGCGAACTCAGTTTTGGAGATGCTGCTGTGGTTTCCGGGAGTGGAACTGTTTCAACCCCTATAGTCCAACGACAGGATCAGATATTCTACTTCCTAACCTTGGACTCGCTGAGTGTTGGAAACAGTTCAGTACCTTTTGGAGCTTCTTCCACTGACTCTGGTTCAGAGGGAAACATCATCATCGACTCAGGGACAACACTCACTCTTTTGCCAGATGATGTTTACCAAAAGTTGGAATCAGCAGTGGCAGATCAAGTGAAGCTAAAACCTGCTAAGGACCCAGAAGGGTTTCTGAGTCTATGCTATGAACTTTCATCTGATGCAGACCAAGGTATACCAGTGATCACAGCACATTTCAGAGGTGCAGATCTGCAGTTGAATCCTGTCAACACTTTTCTTAAGGTTGCAGATGGGATAATATGTTTGGCTTTTCGTTCAAGTGATACAACCATCTTTGGAAACGTGGCACAACAAAACTTCTTGGTTGGGTACGATCTTCAGAAGCAAACAGTCTCTTTTAAGCCTACAAATTGTAATGGGAAGTGA 1314 0.417 MATMVPSYSSLVLVLLFLCNISLSKALKGFSVEMIHRDSEKSPFYRPTETHSQRVANAIQRSIARANHLTKPSLSLDTVESAVIPNSGEYLMTYSVGTPPFKILGIVDTGSNIVWLQCQPCTNCYKQTSPIFDPSQSKTYKTLPCSSKACTSLSSASCSEDGQKCAYTINYGDGSHSSGDLSVDTLTLASTEGSPVSFPNIVLGCGNDNTGTFQANGSGIVGLSGGSSSLISQLSSTIEGKFSYCLSGIFSQSSSPSELSFGDAAVVSGSGTVSTPIVQRQDQIFYFLTLDSLSVGNSSVPFGASSTDSGSEGNIIIDSGTTLTLLPDDVYQKLESAVADQVKLKPAKDPEGFLSLCYELSSDADQGIPVITAHFRGADLQLNPVNTFLKVADGIICLAFRSSDTTIFGNVAQQNFLVGYDLQKQTVSFKPTNCNGK 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g02212 437 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 315 326 IPR001969 GO:0004190|GO:0006508
Phco9g02212 437 CDD pepsin_A_like_plant 89 434 IPR034161 -
Phco9g02212 437 FunFam Probable aspartic protease At2g35615 70 262 - -
Phco9g02212 437 Gene3D Acid Proteases 69 261 IPR021109 -
Phco9g02212 437 Pfam Xylanase inhibitor C-terminal 286 430 IPR032799 -
Phco9g02212 437 ProSiteProfiles Peptidase family A1 domain profile. 90 430 IPR033121 -
Phco9g02212 437 PANTHER OS07G0603500 PROTEIN-RELATED 32 434 - -
Phco9g02212 437 SUPERFAMILY Acid proteases 84 434 IPR021109 -
Phco9g02212 437 Gene3D Acid Proteases 262 437 IPR021109 -
Phco9g02212 437 Pfam Xylanase inhibitor N-terminal 90 263 IPR032861 -
Phco9g02212 437 PRINTS Pepsin (A1) aspartic protease family signature 315 326 IPR001461 GO:0004190|GO:0006508
Phco9g02212 437 PRINTS Pepsin (A1) aspartic protease family signature 406 421 IPR001461 GO:0004190|GO:0006508
Phco9g02212 437 PRINTS Pepsin (A1) aspartic protease family signature 96 116 IPR001461 GO:0004190|GO:0006508
Phco9g02212 437 FunFam Aspartic proteinase CDR1 264 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g02212 Phco-Chr9 47497600 47498913 Dispersed/Transposed