Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g02202 ATGACCAAGATGTCATGCTTTTCTTCTCTTTTTGTTTTACTGTGTCTTTACAACATCTCCTTCTTAGAAGCTCTAAATGGTGGATTCAGTGTGGAGATTATCCACCGTGATTCACCAAAATCACCATTCTATAGTTCCACAGAAACAAAATTCCAAAGGGTTTCCAATGCTCTGCGTCGTTCCTTTAACCGTGCCAATCATTTCAACCAATCCTTTGGGTTTCCAAGCACAGTAAGGGCCACTGTAATACCAGATTTTGGTGAATACGTGATGAGGTATGCAGTTGGAACCCCACCCCTTAAGGTGTTTGGACTTCTTGACACAGGTAGTGACATTATTTGGATGCAATGCATTCCATGCAGAAAATGTTACAGCCAAGCCACTACTTTGTTTGATCCTTCACAATCCAAAACATACAGAACCATCCCTTGCAATTCTAGGATATGCCATTCTGTGCTTGATACCTATTGCAGTAGAAAACATTGTAAATATGATATTAGCTATGCTGATGGAACATTCTCACATGGAGATCTGAGTCAGGAGACCCTCTCTTTAAGCTCCACCAGTGGATCTCCTGTGCAACTTCCAGGAATTGCAATAGGGTGTGGTCGTAACAATGGCATGGTCTTCAAAGGTGCAAATTCTGGCATAGTTGGCCTTGGAAGTGGACCTGCTTCCCTTGTAAACCAATTGGGTCCTTCAGTAGGTTGGAAGTTTTCTTATTGTTTGGTCCCAGAAACTTTGCATTCCAATGCAACTAGCAGACTCAATTTTGGAGATGCTGCTATGGTTACTGGAATTGGAACTGTCTCAACCCCATTGGTTGTTAAACCTAAAGAAGTATTTTACTACCTAACCCTAGAAGGATTCAGCGTGGGAAGCAAAAGAGGAGTGTTTGGAGGATCTTTATCTGGACCTGGAACAGATGGAAATATAGTAATTGACTCAGGTACAACACTCACTCTTTTGCCAGATGATGTTTACACATGGTTGGAAAAAGCAGTGGCAGATGAAGTTAAATTGAAGACTATTAAGGATCCAAATAACTTGTTGGGACTTTGCTACAAAGGCACATTGGATAAACTAGTTTTACCAGTGATCACAGCACACTTTAGAGGTGCAAATGTGCTCTTAAATCCTATGAACACCTTTGTTGAAGTGGCTGATGGGGTTGTGTGCTTGGCTTTTCAGCCAAGTGAAACTGGTGCTGTCTTTGGAAACTTGGCTCAGCAAAACCTTTTGGTTGGCTATGACCTGCAAAAGAATACAGTGTCCTTTAAGCAAACAGATTGCACTAAGATGCGATAA 1308 0.4151 MTKMSCFSSLFVLLCLYNISFLEALNGGFSVEIIHRDSPKSPFYSSTETKFQRVSNALRRSFNRANHFNQSFGFPSTVRATVIPDFGEYVMRYAVGTPPLKVFGLLDTGSDIIWMQCIPCRKCYSQATTLFDPSQSKTYRTIPCNSRICHSVLDTYCSRKHCKYDISYADGTFSHGDLSQETLSLSSTSGSPVQLPGIAIGCGRNNGMVFKGANSGIVGLGSGPASLVNQLGPSVGWKFSYCLVPETLHSNATSRLNFGDAAMVTGIGTVSTPLVVKPKEVFYYLTLEGFSVGSKRGVFGGSLSGPGTDGNIVIDSGTTLTLLPDDVYTWLEKAVADEVKLKTIKDPNNLLGLCYKGTLDKLVLPVITAHFRGANVLLNPMNTFVEVADGVVCLAFQPSETGAVFGNLAQQNLLVGYDLQKNTVSFKQTDCTKMR 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g02202 435 FunFam Probable aspartic protease At2g35615 68 259 - -
Phco9g02202 435 PANTHER OS07G0603500 PROTEIN-RELATED 31 432 - -
Phco9g02202 435 Gene3D Acid Proteases 67 259 IPR021109 -
Phco9g02202 435 Gene3D Acid Proteases 260 435 IPR021109 -
Phco9g02202 435 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 104 115 IPR001969 GO:0004190|GO:0006508
Phco9g02202 435 ProSiteProfiles Peptidase family A1 domain profile. 89 427 IPR033121 -
Phco9g02202 435 SUPERFAMILY Acid proteases 86 432 IPR021109 -
Phco9g02202 435 Pfam Xylanase inhibitor N-terminal 89 260 IPR032861 -
Phco9g02202 435 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 312 323 IPR001969 GO:0004190|GO:0006508
Phco9g02202 435 FunFam Aspartic proteinase CDR1 261 434 - -
Phco9g02202 435 CDD pepsin_A_like_plant 88 431 IPR034161 -
Phco9g02202 435 Pfam Xylanase inhibitor C-terminal 283 427 IPR032799 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g02202 Phco-Chr9 47425061 47426368 Dispersed/Tandem