Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g02201 ATGTCACAGTCATCAACCCTAGTTCTTATTTTACTGTCTCTTTACAGCATCACTTTCTCAGAAGCTCTCAAAGGAGGGTTCAGTGTGGAAATCATCCACCGTGATTCATCAAAATCACCGTTGCATCGTCCCACAGAAACCCAATTCCAGCGAGTTGCTAATGCAGTGCGTCGTTCCATGAATCGTCCCCATCATTTCAACCGAAGTTCACCTAAGGTCAATGTAACACAAAATGATGGTGAATACCTTATCAGCTATTCAGTTGGAACCCCACCATTCAAAGTTTATGGCATTGCTGATACAGGAAGTGACATGATTTGGTTGCAGTGTAAACCTTGTGAAACCTGTTACAACCAAACCACTCCAATATTTGATCCTTCAAAATCCAACACATACAAAACCCTTCATTCCTCCTCTTCTACATGTAAATCAGTGCAAGATGCCTCTAAGGATGGAGAAAATTGTGAATATACTATTCACTATGGGGATGGGTCAGAGTCACATGGAGATCTTAGTGTGGAGACCCTCACTTTAGACTCCACCAATGGCTCTTCAATTCAATATCCCAGAACTGTCATAGGATGTGGACGAAAAAATAGTGGGTCCTTTGAAGGGAAGGGATCTGGGGTAGTTGGCCTAGGAAGAGGACCTGTGTCCTTTATATCTCAATTGGGTTCTTCAATAGGTGGAAAATTTTCCTATTGTTTTGCTCCAATGTCTAATACTTCTAGCAAACTCAATTTTGGAGATGCTGCTGTGGTTTCTGGGAAAGGGACTGTATCAACTCCTATAGTTTCACTGGACCCAATAGTATTTTACTACCTAACATTGGAAGCATTCAGTGTGGGAAACACTAAAATTGAGTTTAGCAAGTCCTCATCTGAATCTAATGGAGAGGGAAACATCATAATTGACTCAGGTACAACACTCACTCTTTTGCCAGATGATATTTACTCCAAGTTGGAATCAGCAGTAGCAAAGGAAATTGAATTAGATCGTGTTGAGGATCCATTTAAACAGTTGAGCCTGTGCTATGGAAGCAGTTTTCATGATCTAAAGGCACCAGTGATCATGGCACATTTTAGAGGTGCAGATGTCAAGTTAAATGCTGTGAACACATTTGTCGAGGTGGAAGAAGGGGTGGTGTGTTTGGCTTTCATGTCAAGTGAAATTGGTTCCATCTTTGGGAACTTGGCTCAGTTAAACTTCTTGGTTGGCTATGACCTAGAAAAGAAAACAGTCTCCTTCAAACCCACAGACTGTACTAAACAGTGA 1275 0.4133 MSQSSTLVLILLSLYSITFSEALKGGFSVEIIHRDSSKSPLHRPTETQFQRVANAVRRSMNRPHHFNRSSPKVNVTQNDGEYLISYSVGTPPFKVYGIADTGSDMIWLQCKPCETCYNQTTPIFDPSKSNTYKTLHSSSSTCKSVQDASKDGENCEYTIHYGDGSESHGDLSVETLTLDSTNGSSIQYPRTVIGCGRKNSGSFEGKGSGVVGLGRGPVSFISQLGSSIGGKFSYCFAPMSNTSSKLNFGDAAVVSGKGTVSTPIVSLDPIVFYYLTLEAFSVGNTKIEFSKSSSESNGEGNIIIDSGTTLTLLPDDIYSKLESAVAKEIELDRVEDPFKQLSLCYGSSFHDLKAPVIMAHFRGADVKLNAVNTFVEVEEGVVCLAFMSSEIGSIFGNLAQLNFLVGYDLEKKTVSFKPTDCTKQ 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g02201 424 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 302 313 IPR001969 GO:0004190|GO:0006508
Phco9g02201 424 Pfam Xylanase inhibitor N-terminal 82 250 IPR032861 -
Phco9g02201 424 ProSiteProfiles Peptidase family A1 domain profile. 82 417 IPR033121 -
Phco9g02201 424 Gene3D Acid Proteases 249 424 IPR021109 -
Phco9g02201 424 SUPERFAMILY Acid proteases 76 421 IPR021109 -
Phco9g02201 424 Pfam Xylanase inhibitor C-terminal 273 417 IPR032799 -
Phco9g02201 424 CDD pepsin_A_like_plant 81 421 IPR034161 -
Phco9g02201 424 Gene3D Acid Proteases 58 248 IPR021109 -
Phco9g02201 424 FunFam Probable aspartic protease At2g35615 62 249 - -
Phco9g02201 424 PANTHER OS07G0603500 PROTEIN-RELATED 29 422 - -
Phco9g02201 424 FunFam Aspartic proteinase CDR1 251 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g02201 Phco-Chr9 47418924 47420198 Dispersed/Tandem