Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g02200 ATGTCACGCTCTATGTCTCTAGTTTTTGTTTTACTGTGTTTTTGCAATCTCTATTCTTTAGAAGCTCTCGATGGTGGATTTAGTGTGGAGATGATCCACCGTGACTCATCAAAATCACCATTCTATAGCTCCAAAGAAACTCCATTCCAAAGGGTTGCCAATGCTATGCGTCGTTCCATAAACCGTGTTAATCATTTCAACCAATCTTCTGTCTCTCCAAACACACCAAAAACCATTGTAGTACCAGATTTGGGCGAATATCTTATGAGCTATTCAGTTGGAACCCCACCATTCAATGTCTACGGAATTCTTGACACTGGCAGTGACATCATTTGGCTACAATGCCAACCATGTAAAAAATGTTACCCACAACCCACTCCTCTCTTTGATTCTTCAAAATCCACCACCTACAGAACCTTCCCTTGCACTTCCAACACATGCAAATCTGTGTTAGGTACCTTTTGCTCACATGTCCCTGACAAGCACTGTGAATATTACATAAACTACATGGATGGCACACTCTCACAAGGAGAACTGAGTGAGGAAACTCTCTCTTTAAGCTCCACCAATGGCACTGAAATCCAATTCCCTGGAATTCTAATAGGATGTGGTCGTTACAACACCATTGCTTTTGTAAGGGCAAATTCTGGCATAGTTGGCCTAGGACGTGGATCTGGTTCCCTTATCAATCAATTGGGTCCTTCAATAGGTGGAAAGTTTTCTTATTGTTTGGTGCCAGCACTTTCACAATCCAATTCAACTAGCAAACTCAATTTTGGAGATGCTGCTGCGGTTTCTGGGGTAGGAACTGTTTCAACACCTTTGTTTTCAAGAAATGGAGATGCACTTTACTACCTACGCTTAGAAGCATTAAGTGTTGGAAGCAATAGAATAGAGTATGGAAGCTCTGTAGGTGGAAGTGGAAATATAGTAATTGACTCAGGAACAACCCTAACTGTTTTGCCAAATGATGTTTACTCGAAGTTGGAAACAGCTGTTGCAAATGCAGTTATGTTGCTGCGTGTTGGGGATCCAAATCAAGTTTTGAACCTTTGTTACGAAGCTACATTTGATGAACTAGATGTACCAGTGATCACAGCACACTTTACTGGTGCAGATGTTCCTTTATATTATGTCAACACCTTTACTCAGGTTGCTGAGGAGGTTGTGTGTTTGGCTTTCATGGCAAGTCAAACTGGTCCTGTTTTTGGGAACTTGGCTCAGCAAAACATTTTGGTTGGCTATGACCTTCAGCAGAATTCAGTGTCCTTTAGAAACACAGATTGCACTCAGCAGTGA 1299 0.4157 MSRSMSLVFVLLCFCNLYSLEALDGGFSVEMIHRDSSKSPFYSSKETPFQRVANAMRRSINRVNHFNQSSVSPNTPKTIVVPDLGEYLMSYSVGTPPFNVYGILDTGSDIIWLQCQPCKKCYPQPTPLFDSSKSTTYRTFPCTSNTCKSVLGTFCSHVPDKHCEYYINYMDGTLSQGELSEETLSLSSTNGTEIQFPGILIGCGRYNTIAFVRANSGIVGLGRGSGSLINQLGPSIGGKFSYCLVPALSQSNSTSKLNFGDAAAVSGVGTVSTPLFSRNGDALYYLRLEALSVGSNRIEYGSSVGGSGNIVIDSGTTLTVLPNDVYSKLETAVANAVMLLRVGDPNQVLNLCYEATFDELDVPVITAHFTGADVPLYYVNTFTQVAEEVVCLAFMASQTGPVFGNLAQQNILVGYDLQQNSVSFRNTDCTQQ 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g02200 432 ProSiteProfiles Peptidase family A1 domain profile. 87 425 IPR033121 -
Phco9g02200 432 Gene3D Acid Proteases 65 261 IPR021109 -
Phco9g02200 432 SUPERFAMILY Acid proteases 82 429 IPR021109 -
Phco9g02200 432 Pfam Xylanase inhibitor C-terminal 284 425 IPR032799 -
Phco9g02200 432 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 102 113 IPR001969 GO:0004190|GO:0006508
Phco9g02200 432 FunFam Aspartic proteinase CDR1 262 432 - -
Phco9g02200 432 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 310 321 IPR001969 GO:0004190|GO:0006508
Phco9g02200 432 Gene3D Acid Proteases 268 432 IPR021109 -
Phco9g02200 432 Pfam Xylanase inhibitor N-terminal 87 261 IPR032861 -
Phco9g02200 432 PANTHER OS07G0603500 PROTEIN-RELATED 29 430 - -
Phco9g02200 432 FunFam Probable aspartic protease At2g35615 66 260 - -
Phco9g02200 432 CDD pepsin_A_like_plant 86 429 IPR034161 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g02200 Phco-Chr9 47415867 47417165 Dispersed/Tandem