Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g02199 ATGTCAGTGATGAACATAATGTCACGTTATTCATCTCTTGTTTTTGTTTTACTGTGTCTTCGCAATCTCTATTCTTTAGAAGCTCTCAATGGTGGATTCAGTGTGGAGATGATCCACCGTGACTCATCAAAATCACCATTCTATAACTCCACAGAAACTCATTTCCAACGAATTGCCAATGCCCTGAGTCGTTCCATTATTCGTGTGAACCATTTCAACAAATCTTTTGTGTCTGCAAACACACCTCAGGCACCTGTAACCTCGGCTCAAGGAGAATATCTAATGAGTTATTATATTGGAACCCCCTTAATCCAAGTCTATGGAATTCTTGATACTGGTAGTGACATTACTTGGCTGCAATGCCAACCATGTCAAACATGTTTCAAGCAAATCACTCCTATTTTTGATCCTTCAAAATCTAAAACTTACAAAACCATCGGTTGCAATACTAACACATGTCGTTATGTACAAGGTACGTGCCCTTCATCCACCACCAGCAGTTGTAAATATTCTATTAGCTATGGTGATGGGTCATACTCAGAGGGAGATCTTAGTTTAGAGACCATTACCTTAGCCTCCACCAATGGCTCTCCTTTCAAAATTCCTAGTACTGTAGTAGGATGTGCTCAGAACAATCATCTTGCCTTTGAACGAGGAGGTTCTGGCATAGTTGCCCTAGGAAATGCACCAGTGTCCCTTGTAAATCAAATGGGCCCATCAATAGGTGGAAAGTTTTCTTATTGTTTGGTGCCAACACTTTCACCACCTAGTATATCTAGCAAACTCAACTTTGGAAATGCTGCTATGGTTTCTGGACCTGGCACTGTCTCAACCCCATTTTATTCACGAGAGCCAGAAGAATTTTACTACCTAAACTTAGAAGCAATTAGTGTGGGAAGGAATAGAATAGAGGTTGGAAGCACTTTACCTAGAGCTGGTGGAAAGGGAAATATTGTAATTGACTCAGGTACAACAATCACTTTTCTACCAAGTGATGCTTACTCAAAGTTGGAATCAGCTGTTGCAAAGGAAGTTAAGTTGCAGTCTGCTAAGGATCCAAATCAAGTGTTGAGCCTTTGTTACAAAGCTAAATCTGATAAACTAGATGTACCAGTGATCACAGCACATTTTACTGGTGCAGATGTCATTTTATATGGTTCCAGCACCTTTATGAAAGTGGCTGATGGTGTTGTGTGCTTGGCATTCGTGCCAAATCAAAGTACTCCCATCTTTGGGAACTTGGCTCAGCAAAACATTTTGGTTGGCTATGATCTTCAGAAGAAAACAGTGTCCTTTAAGCCTGTGGATTGCACGAAACAGTGA 1323 0.4067 MSVMNIMSRYSSLVFVLLCLRNLYSLEALNGGFSVEMIHRDSSKSPFYNSTETHFQRIANALSRSIIRVNHFNKSFVSANTPQAPVTSAQGEYLMSYYIGTPLIQVYGILDTGSDITWLQCQPCQTCFKQITPIFDPSKSKTYKTIGCNTNTCRYVQGTCPSSTTSSCKYSISYGDGSYSEGDLSLETITLASTNGSPFKIPSTVVGCAQNNHLAFERGGSGIVALGNAPVSLVNQMGPSIGGKFSYCLVPTLSPPSISSKLNFGNAAMVSGPGTVSTPFYSREPEEFYYLNLEAISVGRNRIEVGSTLPRAGGKGNIVIDSGTTITFLPSDAYSKLESAVAKEVKLQSAKDPNQVLSLCYKAKSDKLDVPVITAHFTGADVILYGSSTFMKVADGVVCLAFVPNQSTPIFGNLAQQNILVGYDLQKKTVSFKPVDCTKQ 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g02199 440 CDD pepsin_A_like_plant 92 437 IPR034161 -
Phco9g02199 440 FunFam Aspartic proteinase CDR1 267 440 - -
Phco9g02199 440 FunFam Probable aspartic protease At2g35615 72 265 - -
Phco9g02199 440 PANTHER OS07G0603500 PROTEIN-RELATED 35 438 - -
Phco9g02199 440 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 108 119 IPR001969 GO:0004190|GO:0006508
Phco9g02199 440 Gene3D Acid Proteases 72 263 IPR021109 -
Phco9g02199 440 Pfam Xylanase inhibitor N-terminal 93 266 IPR032861 -
Phco9g02199 440 SUPERFAMILY Acid proteases 88 437 IPR021109 -
Phco9g02199 440 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 318 329 IPR001969 GO:0004190|GO:0006508
Phco9g02199 440 Gene3D Acid Proteases 264 440 IPR021109 -
Phco9g02199 440 ProSiteProfiles Peptidase family A1 domain profile. 93 433 IPR033121 -
Phco9g02199 440 Pfam Xylanase inhibitor C-terminal 289 433 IPR032799 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g02199 Phco-Chr9 47412885 47414207 Dispersed/Tandem