Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g02196 ATGTGGCACCTAACAATCCATGTGACAAATCAAGACTTTAAGAAACTCTCCATTGGCATCAAGACAAGTGGCACTAGGAGGTTGAAGAGGCCATGCAAGTGGCGTACAAGGAGTGGACAAGAGGCTTGGAGAAGCATGAAGAGTCACCTTGGGAGAGAAGCACATGGCGACTATTTGGATGCCTTGAAATGGTTTCCCATTGCTACAATGCAAAATACTCGCAGTACCCGATTCAGTGTGGAGATGATCCACCGTGACTCACCAAAATCACCATTCTATAACTCCACAGAAACTCAGTTCCAACGAATTGCCAATGCCCTGAGTCGTTCCATTATCCGAGTGAACCATTTCAACAAATCTTTTGTGTCTGCAAACACACCTCAGGCACCTGTAACCTCGGCTCAAGGAGAATATCTAATGAGTTATTCTGTTGGAACCCCACCACTCCAAGTCTATGGAATTCTTGATACTGGTAGTGAAATTACTTGGGTGCAATGCCAACCATGTCAAACCTGTTTCAAGCAAATCACTCCTATCTTTGATCCTTCAAAATCCAAAACCTACAAAACCATCAGTTGCACTACTAATAAATGTCGTTCTGTACAAGGTACCTCTTGCCCTTCATCCACCAGCAATTGTAAATATTCTATTAGCTATGGTGATGGGTCATACTCACAAGGAGATCTTAGTTTTGAGACCCTTACCTTACCCTCCACCAATGGCTCTCCTGTCAAAATTCCTAGATTTGGATTAGGATGTGGTCAGAGCAATTATCTTTACTTTAAACGTGGAGGTTATGGCATAGTTGGCCTAGCACGTGCACCAGTGTCTTTTGTAAATCAATTGGGTCCATCAATAGGTGGAAAGTTTTCTTATTGTTTGGTACCAATACCTTCACCACCTAGTATATCTAGCAAACTCAATTTTGGAAATGCTGCTGTGGTTTCTGGGCATGGCACTGTTTCAACCCCCTTATATTCACGAAATCGAGAAGTATTTTACTACCTAAACTTAGAAGCAATTAGTGTGGGAAGCAATAGAATAGAGTTTGAAAGCTTTTTACCAAGAGCTAATGGAAAGGGAAATATCATAATAGACTCAGGTACAACACTCACTTTTCTACCAAATGATGTTTACTCAAAGTTGGAATCAGCTGTTGCAAGGGTTGTTAAGATGCAACCTGCTAAGGATCCAAGTCAAGTGTTGAGCCTTTGTTACAAAGTATATGATAGACCATATGTACCAGTGATCACAGCACATTTTACTGGTGCAGATGTCCTTTTATATGATTCCAACACCTTTCTTAAAGTGGCTGATGGTGTTGTGTGCTTGGCATTCCTGCCAAGTCATAGTAGTGCTATCTTTGGGAACTTGGCTCAGCAAAACATGTTGGTTGGCTATGATCTTCAAAAGAACACAGTGTCCTTTAAGCTTGCGGATTGCACGAAGCAGTGA 1455 0.4172 MWHLTIHVTNQDFKKLSIGIKTSGTRRLKRPCKWRTRSGQEAWRSMKSHLGREAHGDYLDALKWFPIATMQNTRSTRFSVEMIHRDSPKSPFYNSTETQFQRIANALSRSIIRVNHFNKSFVSANTPQAPVTSAQGEYLMSYSVGTPPLQVYGILDTGSEITWVQCQPCQTCFKQITPIFDPSKSKTYKTISCTTNKCRSVQGTSCPSSTSNCKYSISYGDGSYSQGDLSFETLTLPSTNGSPVKIPRFGLGCGQSNYLYFKRGGYGIVGLARAPVSFVNQLGPSIGGKFSYCLVPIPSPPSISSKLNFGNAAVVSGHGTVSTPLYSRNREVFYYLNLEAISVGSNRIEFESFLPRANGKGNIIIDSGTTLTFLPNDVYSKLESAVARVVKMQPAKDPSQVLSLCYKVYDRPYVPVITAHFTGADVLLYDSNTFLKVADGVVCLAFLPSHSSAIFGNLAQQNMLVGYDLQKNTVSFKLADCTKQ 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g02196 484 Gene3D Acid Proteases 117 308 IPR021109 -
Phco9g02196 484 Pfam Xylanase inhibitor C-terminal 334 477 IPR032799 -
Phco9g02196 484 ProSiteProfiles Peptidase family A1 domain profile. 138 477 IPR033121 -
Phco9g02196 484 CDD pepsin_A_like_plant 137 481 IPR034161 -
Phco9g02196 484 PANTHER OS07G0603500 PROTEIN-RELATED 80 482 - -
Phco9g02196 484 FunFam Probable aspartic protease At2g35615 117 310 - -
Phco9g02196 484 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 153 164 IPR001969 GO:0004190|GO:0006508
Phco9g02196 484 Pfam Xylanase inhibitor N-terminal 138 311 IPR032861 -
Phco9g02196 484 FunFam Aspartic proteinase CDR1 312 484 - -
Phco9g02196 484 Gene3D Acid Proteases 309 484 IPR021109 -
Phco9g02196 484 SUPERFAMILY Acid proteases 133 481 IPR021109 -
Phco9g02196 484 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 363 374 IPR001969 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g02196 Phco-Chr9 47390003 47394856 Tandem