Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g02188 ATGCTGAGTGCCACTTCAAAAACTAACAAGCTGTTACCTTTTTTGGATTTGGCTTGGGCTAAGCTCAAGCTGGTGATTGCTTTTGCTAGCATGGCATCAAGTAATTTATTCTTTGATGATATTCGGAGCAAAGTCGACGTTGATCCTCCTCAAAATGAAGAGTCAACAGATGTTGGTGAATTAGTAAATGATCCTGCACAAACTGCACTTAAACCTAATGGTACTGTTTCAAGCAGTGTTCGTGAGCTATTAGAGTGCCCTGTATGCTTGAATGCCATGTACCCTCCAATCCATCAGTGTTCAAATGGTCACACAATATGCTCTGGTTGCAAACCCAGGGTCCATAACAGGTGCCCTACTTGTAGGCATGAGCTTGGCAATATAAGATGCCTTGCACTGGAGAAAGTGGCTGCATCCTTGGAACTTCCGTGTAAATATCAAGGATTTGGATGCATTGGAATATATCCCTATTACAGCAAGCTAAAGCATGAATCACAATGTGCATATAGACCTTACAACTGTCCATATGCTGGTTCAGAATGCTCTATTATGGGTGATATACCCTACCTTGTGGCTCATTTGAAAGACGACCACAAAGTGGACATGCACAATGGTAGCACTTTCAACCATCGCTATGTCAAATCAAATCCACATGAAGTTGAAAATGCCACGTGGATGTTAACGGTCTTCAGCTGCTTTGGTCAGTATTTTTGTTTACATTTTGAAGCTTTTCAGCTTGGAATGGCTCCTGTCTACATAGCCTTTTTGCGGTTTATGGGTGATGATAATGAAGCAAAAAATTATAGCTACAGTTTAGAGGTAGGTGGAAATGGGAGGAAGATGATTTGGCAGGGTGTGCCTAGAAGCATCAGGGACAGCCACCGAAAGGTTCGTGACAGTTTTGATGGTCTCATAATCCAGAGAAATATGGCCCTTTTCTTTTCCGGTGGCGACCGGAAGGAATTGAAGCTAAGGGTTACTGGTAGGATTTGGAAAGAACAATGA 1005 0.4239 MLSATSKTNKLLPFLDLAWAKLKLVIAFASMASSNLFFDDIRSKVDVDPPQNEESTDVGELVNDPAQTALKPNGTVSSSVRELLECPVCLNAMYPPIHQCSNGHTICSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQGFGCIGIYPYYSKLKHESQCAYRPYNCPYAGSECSIMGDIPYLVAHLKDDHKVDMHNGSTFNHRYVKSNPHEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGRKMIWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g02188 334 FunFam E3 ubiquitin-protein ligase SINAT5-like 195 327 - -
Phco9g02188 334 ProSiteProfiles Zinc finger RING-type profile. 86 122 IPR001841 -
Phco9g02188 334 ProSiteProfiles Zinc finger SIAH-type profile. 139 199 IPR013010 GO:0008270
Phco9g02188 334 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 71 333 - -
Phco9g02188 334 CDD RING-HC_SIAHs 84 122 - -
Phco9g02188 334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 138 194 IPR013083 -
Phco9g02188 334 Pfam Seven in absentia protein family 128 327 IPR018121 GO:0005737|GO:0006511|GO:0007275
Phco9g02188 334 SUPERFAMILY TRAF domain-like 139 331 - -
Phco9g02188 334 CDD Sina 200 328 - -
Phco9g02188 334 FunFam E3 ubiquitin-protein ligase SINAT5-like 44 137 - -
Phco9g02188 334 FunFam E3 ubiquitin-protein ligase SINAT3 138 194 - -
Phco9g02188 334 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 195 327 IPR008974 GO:0005515
Phco9g02188 334 SUPERFAMILY RING/U-box 78 126 - -
Phco9g02188 334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 42 137 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g02188 Phco-Chr9 47293758 47297730 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g02188 9 47293758 47297730 Phco9g02188 9 47293758 47297730 ECH
Phco10g00286 10 2626262 2629624 Phco9g02188 9 47293758 47297730 PCT