Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g02186 ATGTCTATGCAGCATGAAAATTCTGATACAAAAGAAGTAATATGTCCCCAGAGAAGGCTAACAAATCTGATGCATCATTCTGGGAACAAGTACTGCGCTGATTGCGGAACTCCAGAGCCAAAATGGGTATCTTCAAGTCTTGGAGTATTTATTTGCATCAAGTGTTCTGGAATACATAGAAGTCTAGGAGTCCACATATCAAAGGTTCTATCATTGAAGTTAGATGAATGGACAGATGAACAAGTTGATGCATTAGCAAAATTAGGAGGAAATACACTATTAAACAAGAAGTACGAAGCTTGCCTCCCAAGTAACATGAGAAAACCAAAACCACATTCTTCCATTGAAGAACGCTCTGAATTTATTCGGAGAAAATATGAGATGCAACAGTTTATGGGGTGTGATGACCATATGGCAGGCACCATTGTCCAATCTCAAGGAAGAAGTATATCACTTGCTCAGTGCAGCTCTTCATACTATCATGCTTTTATGGACAAAAAACCATCTGAAAAAAATCCAAGCAAAACTCGTATTGGGAGTGCATTCCGAAATAGTTGGGGAAGAAAAGATTCTGAGCACAAGTCAAAGAAAAGTACCTCATTGGCAGGTATGGTTGAATTTGTTGGATTGATTAAGGTTAATGTGGTTAAAGGCACTCACCTAGCCGTTCGAGACGTAATGACTAGTGACCCTTATGTCATCCTTTCTTTGGGTCACCAATCAGTAAAAACACGAGTCATAAAGAACAATTTGAATCCAGTCTGGAATGAAAGTCTAATGCTTTCAATTCCAGAGAACATTCCTCCTCTAAAAGTGCTTGTGTATGACAAGGATACATTTTCAACTGATGATTTTATGGGAGAGGCTGAAATAGACATTCAACCTCTAGTTATAGCAGCAAAGGCCTATGAGAAATCGACTATAAATGAGTCCATGCAGCTTGGTAAATTTGTAGCAAGCAAGGACAACACCCTTGTTAGAGATGGCATCATATCCCTTGATGAAGGCAAGATCAAACAGGAGATCTCAGTGAGACTACAGAATATTGAGAGAGGTGAACTTGAGCTTGAGCTTGAGTGTGTTCCTCTCACTCAATAG 1098 0.3934 MSMQHENSDTKEVICPQRRLTNLMHHSGNKYCADCGTPEPKWVSSSLGVFICIKCSGIHRSLGVHISKVLSLKLDEWTDEQVDALAKLGGNTLLNKKYEACLPSNMRKPKPHSSIEERSEFIRRKYEMQQFMGCDDHMAGTIVQSQGRSISLAQCSSSYYHAFMDKKPSEKNPSKTRIGSAFRNSWGRKDSEHKSKKSTSLAGMVEFVGLIKVNVVKGTHLAVRDVMTSDPYVILSLGHQSVKTRVIKNNLNPVWNESLMLSIPENIPPLKVLVYDKDTFSTDDFMGEAEIDIQPLVIAAKAYEKSTINESMQLGKFVASKDNTLVRDGIISLDEGKIKQEISVRLQNIERGELELELECVPLTQ 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g02186 365 CDD ArfGap 20 126 - -
Phco9g02186 365 SMART C2_3c 210 305 IPR000008 -
Phco9g02186 365 SUPERFAMILY ArfGap/RecO-like zinc finger 17 132 IPR037278 -
Phco9g02186 365 ProSiteProfiles ARF GTPase-activating proteins domain profile. 17 139 IPR001164 GO:0005096
Phco9g02186 365 MobiDBLite consensus disorder prediction 166 197 - -
Phco9g02186 365 Gene3D Arf GTPase activating protein 2 138 IPR038508 -
Phco9g02186 365 Gene3D C2 domain 207 365 IPR035892 -
Phco9g02186 365 ProSiteProfiles C2 domain profile. 191 307 IPR000008 -
Phco9g02186 365 Pfam C2 domain 210 296 IPR000008 -
Phco9g02186 365 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 207 365 - -
Phco9g02186 365 CDD C2_ArfGAP 208 352 - -
Phco9g02186 365 FunFam stromal membrane-associated protein 1 isoform X1 2 137 - -
Phco9g02186 365 SMART arf_gap_3 17 139 IPR001164 GO:0005096
Phco9g02186 365 Pfam Putative GTPase activating protein for Arf 18 132 IPR001164 GO:0005096
Phco9g02186 365 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 13 365 IPR044518 GO:0005096|GO:0005543
Phco9g02186 365 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 206 300 IPR035892 -
Phco9g02186 365 PRINTS HIV Rev interacting protein signature 29 48 IPR001164 GO:0005096
Phco9g02186 365 PRINTS HIV Rev interacting protein signature 48 65 IPR001164 GO:0005096
Phco9g02186 365 PRINTS HIV Rev interacting protein signature 69 90 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g02186 Phco-Chr9 47281984 47285846 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g00282 10 2593638 2600506 Phco9g02186 9 47281984 47285846 PCT