Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco9g02183 | ATGCGGGATTTGAGTAAAACGCGGTCGTTCCCTGTTTCGTTCCTTTCTCTTTCCCGCGCCGCGCTAGCGGTTCTTTCTTTCCTAATCCCAACCAAAATTTGGGGTTTAGGGTTTTCCTCTCTTCTCTGCAATCCAATTTCTTGCATTGCTCCATATCTGTTTCTCTTTCTCCACAATCCAGTGACAATGATGTACAATGATCCGCAGCATCAGCAGCACCAGCAGCACCAGTACCAGCAGCAGCAGCAGCAGCCGCCGCCGCATTTCCACCACCAGCCGGCGGGTCAGGAGTTCCACCGCGGACCTCCGCCGTCATCGCAGGCGCCGCCGGTGATGCGGCAAGGTTCCGCTTCGTCGACGAACATGGCCCCCGAGTTTCACCACCCCGGCCCCGGAGGACCCCCACCTCCTCATTACGATGTTCACAGTGATAGTCATGGTGCAAAAAGAATACGAAAGCTTACTCAAAGGAAAGCAGTTGATTATACAAGCACAGTCGTGCGTTATATGCAGATTCGTATGTGGCAGCGGGATTCAAGGGATAGGACAGTACTGCAACCTACACCAGCAGCAGCAATTGATATGTTGCCAGCAGTTGGCTATCCAGACAACCCATCCACGAGCTTTGCTGCTAAATTTGTTCATACATCTCTAAATAAAAATCGTTGCCCCATTAATCGCGTTCTTTGGACTCCAACAGGCCGCCGACTTATTACTGGCTCACAGACTGGGGAATTCACTCTTTGGAATGGACAATCTTTTAATTTTGAAATGATTCTTCAGGCTCATGATCAAGCAATCAGGTCCATGGTCTGGAGTCACAATGACAACTGGATGGTCTCTGGTGATGATGGAGGCGCAATAAAGTATTGGCAGAACAACATGAACAATGTTAAAGCCAACAAATCTGCTCATAAAGAATCAGTCCGTGACTTAAGTTTCTGTAGGACAGATTTGAAGTTTTGTTCATGCTCCGATGATACCACAGTTAAGGTTTGGGATTTTGCACGTTGTCAAGAAGAGTGCTCATTAACTGGCCATGGTTGGGATGTGAAGAGTGTTGACTGGCATCCTACAAAATCCCTATTAGTATCAGGTGGTAAAGACAATCTTGTGAAACTTTGGGACGCCAAATCAGGGAAAGAGCTTTGCTCATTTCATGGGCACAAAAATACTGTGCTATGTGTCAAATGGAATCAAAATGGCAACTGGGTGTTAACAGCTTCAAAGGATCAAATAATAAAGCTTTATGACATAAGAGCCATGAAGGAGCTTGAATCTTTCCGTGGACATCGCAAGGATGTTACTGCTTTGGCGTGGCATCCATTCCATGAAGAGTACTTTGTGAGTGGGAGTTATGATGGTTCCATCTTCCATTGGCTTGTCGGGCATGAAACTCCCCAAATTGAAATTGCCAATGCTCATGATAATAACGTGTGGGATCTTGCATGGCATCCTATTGGATACCTTCTGTGCAGTGGCAGCAGTGATCATACAACAAAGTTTTGGTGCAGAAATAGGCCAGGAGACACTCTTCGTGATAGATTTAACCCTGGCATGCAAGGATATGCTGACCCTAATCCTGTTGCTGGCCGGGTGGGTGGTAATTTTCCAATGGCTGAAGGCCCAACAACTCCAGGACCATTTGCCCCTGGGTTAACTCGAAATGATGGCACCATTCCAGGTGTTGGAGTTGCAATGCCCTTATCTATTCCTTCTCTTGACATGCCTCAAGGAGAGCAGAAGCAGCCCCATCCTGTTTCAATGGGCGCTCCCCCTCTTCCCCCAGGTCCTCATCCCTCTCTTCTTAGTGCCAACCAACAACAACCATACCAACAGAATCCTCAGCAGATGCCGCCACAACATCAACACCAGGGTCTACCACAGCAGATGGGTCCTTTGCCTATGCCTCCTAATATGCCACAATTACAGCACCCTTCCCATTCACCCATGGTCCCTCACCAGCATTTACCTCGCCCTCCTCCCCAAATGCCTATTGGCATGCCAGGATCTATACCAGGGATTTCATCAGTGCCTACATCACATCCGATGCCAATGCCTGGCCCTATGGGGATGCAAGGGGCCATGAATCAGATGGGTACTCCAATGCCACAAGGTCCTTATGTGGGCATGAATCAAATGCATTCAGGATCCTTGCCTACTAGTGGAGGACCACCACTTGGTGGTTTTCCAGGCAACATGCCAAATATTCCAGGCCCATCAAATGCCAATTATCCTCAAGGTGCTTCATTTAACAGACCTCAAGGTGGCCAGATGCCTTTGATGCAAGGGTATAATCCTTTCCAGTCTGGTAATCAATCTGGGATGCCTCCAAACGTACAACCCTAG | 2349 | 0.4815 | MRDLSKTRSFPVSFLSLSRAALAVLSFLIPTKIWGLGFSSLLCNPISCIAPYLFLFLHNPVTMMYNDPQHQQHQQHQYQQQQQQPPPHFHHQPAGQEFHRGPPPSSQAPPVMRQGSASSTNMAPEFHHPGPGGPPPPHYDVHSDSHGAKRIRKLTQRKAVDYTSTVVRYMQIRMWQRDSRDRTVLQPTPAAAIDMLPAVGYPDNPSTSFAAKFVHTSLNKNRCPINRVLWTPTGRRLITGSQTGEFTLWNGQSFNFEMILQAHDQAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEECSLTGHGWDVKSVDWHPTKSLLVSGGKDNLVKLWDAKSGKELCSFHGHKNTVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSYDGSIFHWLVGHETPQIEIANAHDNNVWDLAWHPIGYLLCSGSSDHTTKFWCRNRPGDTLRDRFNPGMQGYADPNPVAGRVGGNFPMAEGPTTPGPFAPGLTRNDGTIPGVGVAMPLSIPSLDMPQGEQKQPHPVSMGAPPLPPGPHPSLLSANQQQPYQQNPQQMPPQHQHQGLPQQMGPLPMPPNMPQLQHPSHSPMVPHQHLPRPPPQMPIGMPGSIPGISSVPTSHPMPMPGPMGMQGAMNQMGTPMPQGPYVGMNQMHSGSLPTSGGPPLGGFPGNMPNIPGPSNANYPQGASFNRPQGGQMPLMQGYNPFQSGNQSGMPPNVQP | 782 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco9g02183 | 782 | CDD | WD40 | 222 | 503 | - | - | |
| Phco9g02183 | 782 | MobiDBLite | consensus disorder prediction | 601 | 628 | - | - | |
| Phco9g02183 | 782 | SUPERFAMILY | WD40 repeat-like | 214 | 503 | IPR036322 | GO:0005515 | |
| Phco9g02183 | 782 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 344 | 385 | IPR001680 | GO:0005515 | |
| Phco9g02183 | 782 | MobiDBLite | consensus disorder prediction | 737 | 782 | - | - | |
| Phco9g02183 | 782 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 218 | 250 | IPR001680 | GO:0005515 | |
| Phco9g02183 | 782 | MobiDBLite | consensus disorder prediction | 68 | 149 | - | - | |
| Phco9g02183 | 782 | FunFam | Flowering time control protein FY | 376 | 513 | - | - | |
| Phco9g02183 | 782 | Gene3D | - | 375 | 513 | IPR015943 | GO:0005515 | |
| Phco9g02183 | 782 | MobiDBLite | consensus disorder prediction | 68 | 89 | - | - | |
| Phco9g02183 | 782 | SMART | WD40_4 | 295 | 334 | IPR001680 | GO:0005515 | |
| Phco9g02183 | 782 | SMART | WD40_4 | 464 | 504 | IPR001680 | GO:0005515 | |
| Phco9g02183 | 782 | SMART | WD40_4 | 206 | 250 | IPR001680 | GO:0005515 | |
| Phco9g02183 | 782 | SMART | WD40_4 | 379 | 418 | IPR001680 | GO:0005515 | |
| Phco9g02183 | 782 | SMART | WD40_4 | 421 | 461 | IPR001680 | GO:0005515 | |
| Phco9g02183 | 782 | SMART | WD40_4 | 253 | 292 | IPR001680 | GO:0005515 | |
| Phco9g02183 | 782 | SMART | WD40_4 | 337 | 376 | IPR001680 | GO:0005515 | |
| Phco9g02183 | 782 | PANTHER | WD40 REPEAT PROTEIN | 140 | 774 | IPR045245 | GO:0031124 | |
| Phco9g02183 | 782 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 472 | 503 | - | - | |
| Phco9g02183 | 782 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 260 | 292 | - | - | |
| Phco9g02183 | 782 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 386 | 420 | - | - | |
| Phco9g02183 | 782 | FunFam | Flowering time control protein FY | 167 | 375 | - | - | |
| Phco9g02183 | 782 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 260 | 292 | IPR001680 | GO:0005515 | |
| Phco9g02183 | 782 | Pfam | WD domain, G-beta repeat | 342 | 376 | IPR001680 | GO:0005515 | |
| Phco9g02183 | 782 | Pfam | WD domain, G-beta repeat | 258 | 291 | IPR001680 | GO:0005515 | |
| Phco9g02183 | 782 | Pfam | WD domain, G-beta repeat | 303 | 334 | IPR001680 | GO:0005515 | |
| Phco9g02183 | 782 | Pfam | WD domain, G-beta repeat | 380 | 418 | IPR001680 | GO:0005515 | |
| Phco9g02183 | 782 | Pfam | WD domain, G-beta repeat | 424 | 460 | IPR001680 | GO:0005515 | |
| Phco9g02183 | 782 | Pfam | WD domain, G-beta repeat | 474 | 503 | IPR001680 | GO:0005515 | |
| Phco9g02183 | 782 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 472 | 503 | IPR001680 | GO:0005515 | |
| Phco9g02183 | 782 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 363 | 377 | IPR019775 | - | |
| Phco9g02183 | 782 | PRINTS | G protein beta WD-40 repeat signature | 363 | 377 | IPR020472 | - | |
| Phco9g02183 | 782 | PRINTS | G protein beta WD-40 repeat signature | 321 | 335 | IPR020472 | - | |
| Phco9g02183 | 782 | PRINTS | G protein beta WD-40 repeat signature | 491 | 505 | IPR020472 | - | |
| Phco9g02183 | 782 | Gene3D | - | 170 | 374 | IPR015943 | GO:0005515 | |
| Phco9g02183 | 782 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 428 | 460 | - | - | |
| Phco9g02183 | 782 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 386 | 427 | IPR001680 | GO:0005515 | |
| Phco9g02183 | 782 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 428 | 460 | IPR001680 | GO:0005515 | |
| Phco9g02183 | 782 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 302 | 334 | - | - | |
| Phco9g02183 | 782 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 344 | 381 | - | - | |
| Phco9g02183 | 782 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 302 | 334 | IPR001680 | GO:0005515 | |
| Phco9g02183 | 782 | MobiDBLite | consensus disorder prediction | 556 | 660 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phco9g02183 | Phco-Chr9 | 47243752 | 47258032 | Dispersed |