Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g02180 ATGGCTGTGGTGGCTTTAGAGACTCAGTTCCATGTTTTGGCTGTTGATGACAGTCTCATTGACAGAATGTTGATTGAGAGACTCTTGAAAACCTCTTCCTTTAATGTTACTACAGTTGATTCTGCCACCAAGGCCTTAAAGTTTCTTGGTTTGGTTGAAGATGAGTTGAAAACTTTTGAAACTTCTGTTGCATCAGAAATTCATCAGGATGTAGATGTTAACCTGATTATAACAGATTACTGTATGCCAGGAATGACTGGTTATGATCTGTTGAGAAAAATCAAGGAATCTAAATCACTTAAGAACATACCAGTTGTGATTATGTCCTCAGAGAATGTGCCATCAAGGATCAACAGATGTTTGGAAGAAGGAGCAGAAGAGTTCTTTCTGAAACCAGTTCAACAAGCAGATGTAAATAAACTGAAGCCACATTTGATGAAATCAAGAACTAAAGAAGAGCAAGATCAACCACTGATCAATAACAAAAGAAAGGACATGGAAGAAATTTATTCCCCAAACAAAACCAGATTAAGATGCAGCAGTTAG 546 0.3718 MAVVALETQFHVLAVDDSLIDRMLIERLLKTSSFNVTTVDSATKALKFLGLVEDELKTFETSVASEIHQDVDVNLIITDYCMPGMTGYDLLRKIKESKSLKNIPVVIMSSENVPSRINRCLEEGAEEFFLKPVQQADVNKLKPHLMKSRTKEEQDQPLINNKRKDMEEIYSPNKTRLRCSS 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g02180 181 SUPERFAMILY CheY-like 9 154 IPR011006 -
Phco9g02180 181 ProSiteProfiles Response regulatory domain profile. 11 146 IPR001789 GO:0000160
Phco9g02180 181 PANTHER TWO-COMPONENT RESPONSE REGULATOR 10 160 IPR045279 GO:0009736
Phco9g02180 181 Gene3D - 11 177 - -
Phco9g02180 181 SMART REC_2 10 145 IPR001789 GO:0000160
Phco9g02180 181 Pfam Response regulator receiver domain 12 138 IPR001789 GO:0000160
Phco9g02180 181 CDD REC_typeA_ARR 12 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g02180 Phco-Chr9 47232350 47233836 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Phco9g02180 Response_reg 2.1e-19 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g02180 9 47232350 47233836 Phco10g00230 10 1973639 1977509 PCT