Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g02177 ATGGAAGACAATCCTCCCTCAAGTGTTTTAGATGGGATGGTTGTTGGAGTCAAATTTGGTATGGCTACACGCCAGGAAATTTGTACGGCATCGATTAGTGACTCTTCAATTAGTCATGCTAGTCAGCTGTCAAATCCCTTCCTTGGGCTACCCCTTGAATTTGGCAGATGTGAATCCTGTGGTACTTCTGAAGCAGGAAAATGTGAAGGTCACTTTGGATATATTGAGCTACCAGTTCCAATATATCATCCTAGTCATATTAGTGAGTTGAAACGGTTGCTGAGCCTTGTCTGTTTAAACTGCTTGAAAATGCGGAAAACCAAGCTTTCAGCGTCAGGCAGTGGTTTGGCACAGAGATTAGTATCTCCTTGTTGTGAGGAGGTTAATGCTGCTCAAATTTCAATACGGGAGGTTAAAACAAGTGATGGGGCTTGTTATCTGGCACTCAAGGTATCCAAAACCAAGATGCATCCTGATTTTTGGGGTTTTTTAGAAAAATATGGCTATCGCTATGAGGGTGATCACACTCGAGCCTTACTTCCTTGTGAGGCAATGGAAATTATTAAGAGAATTCCAATAGAAACCAAAAAAAAGCTTGCTGGAAAAGGGTATTTTCCTCAAGATGGATATGTTTTTAAGTATCTTCCGGTGCCACCTAATTGCTTGTCTGTGCCAGAAGTTTCAGACGGCATCAGTGTCATGTCTTCGGATCCTTCCATGACAATTCTGAGAAAATTGCTCAGGAAGGTTGAAATTATTAAAAGTTCTAGATCGGGAGAACCAAATTTCGAGTCTCATCACATAGAAGCAAATGATCTGCAGTCAGTGGTTGAGCAGTATTTACAAATTAGGGGCACTTCTAAGGCAGCACGTGACACAGAAACACGTTTTGGGGTCAATAAGGAGCTTAGTGCATCATCAACGCAAGCATGGCTAGAGAAAATGCGGACTTTATTTATAAGAAAAGGTTCAGGCTTTTCCTCCCGGAATGTGATAACTGGAGATTGTTATAAAAGAATAAATGAAGTAGGAATTCCGGTTGAAGTTGCCCAACGAGTAACATTTGAGGAGAGAGTTAACATCCATAACATAAGTTATTTGCAGAAATTAGTTGATGAAAATCTGTGCTTGACCTACAAGGAAGGTGTATCAACTTTTTCGCTTAGAGAGGGCTCAAAGGGTCACATATATCTGAAGCCTGGTCAGATAGTGCATCGTAGGATTATGGATGGGGATATCGTCTTCATTAATAGACCCCCTACAACACACAAGCACTCTTTACAGGCACTTTTTGTTTACATCCATGATGACCACACTGTGAAAATAAACCCTTTAATTTGTGGACCACTTGGAGCTGATTTTGATGGTGACTGTGTCCATCTGTTTTATCCACAGTCACTTGCTGCCAAAGCAGAAGTTGTGGAGCTATTTTCTGTGGAGAATCAACTGCTCAGCTCTCACAGTGGTAATTTGAATCTACAGTTAAGCACAGATTCGTTGTTGTCACTGAAGATGTTGGTCAAGAGATGTGTTTTTGATAGAGCAGCAGCTAATCAATTCGCAATGTTTCTTTTACCTTTGCCTCGACCTGGTTTGATCAAGGCCAGTTCTGGTGATTCTTATTGGACTTCCATCCAAATGTTACAGTGTGCTCTACCTTTGTGTTTTGATTGCTCTGGGGGACGATATTTGATTAGGCAGAGTGAAATCTTAGAATTTGATTTCAATAGGGACGTTTTGCCTGCAACAATAAATGAAATAGCAGCCTCAATTTTCTTTAGTAAGGGTCCGAAGGAGGCACTAAAGTTCTTTGATGTATTGCAGCCTTTTTTGATGGAAAGTATATTTGCTGATGGGTTTAGTGTTAGCCTGCAAGATTTTTCAATATCTAAGGCAATCAAAAGAATTATAAGCAGAAGCATAGGAAAAGTTTCTTCTCTGTTGTATCAGCTGAGGTCCATTTACAATGAGCTGGTGGCGCAACAATTGGAGAAGCTTATTCGTGATATTGAGAATCCTGTTATTAATTTTGCTCTAAAGTCAACTAAACTAGGAGATTTAATCGATTCAAAGAGTAAATCTGCAATTGATAAGGTTGTTCAGCAGATTGGTTTCTTAGGGCAGCAACTATTTGATAGGGGAAGATTCTATTCAAAAGGATTGGTAGAAGATGTAGCATCTCATTTTCATGTGAAGTGTTGTTATGACGGGGATGGTTATCCCTCTGCTGAGTATGGATTGCTCAAAGGGTCTTTTTTTAATGGTTTGGATCCATATGAAGAGATGGTGCATTCAATTTCAACAAGGGAAGTAATGGTGCGTTCTTCAAGGGGATTATCTGAACCAGGAACACTCTTCAAGAATTTGATGGCCATTCTGCGAGATGTTGTTATCTGTTATGATGGAACTGTCAGAAATATTTGCAGTAATTCCATTATCCAGTTTGAATATGGATTAGAAAAAACTGAGCACCTATTCCCTGCCGGTGAGCCTGTAGGTGTCTTAGCTGCAACTGCTATGTCAAATCCTGCTTACAAGGCTGTCCTTGATGCTAGTCCCAATAGCAATTCCTCATGGGAGTTGATGAAGGAAATATTACTATGCAAGGTCAATTTTAGGAATGAACCTGCTGATCGGCGTGTTATTTTGTACTTGAATGACTGTGATTGTGGAGGGAATTATTGCCGTGAAAATGCAGCATATAAAGTTAAAGATCAATTGAGAAAAGTCAATCTTAAGGATGCAGCAGTGGAGTTTGTTATTGAATATCAAGAACAGCGAATTCAAAAGGGAAATTCTGAAACTGATGCTGGACTTGTTGGTCATATTTATCTGGATGAGATGATGTTAGAGGAGCTGAAGATCAGCATGGCCAACGTTTTTCAGAAATGCTTGGAAAGACTAAAATCCTTTAGTCCGAGAAAGAAAGCTAATCAATTTTTGAAGAGGACTGAATTATCGTTTAGTGAGTCTTGCTCCTCTTCACATCCTGCTGCACCGTGTTTAACATTCATTTGGGTTGACGATCGTAATAATGAATTTGATTACATTGTAAAGATCCTATCTGAAAAAATCTGTCCTGTTCTGTTAGAAACAATAATCCAAGGAGACCCACGCATTAGCTCTGCAAGTATAATTTGGGTTACTCCGGATACAAACACATGGGTCCGAAACCCTTATAAATCTTCCAATGGTGAACTGGCACTGGATATTATTCTTGAGAAGGAAGTAGTCAAACAGAGTGGTGATGCTTGGAGGATTGTACTTGATTCCTGCCTTCCTGTTCTTCATTTGATTGATACCAGGCGTTCAATCCCTTATGCTATTAAGCAAACTCAAGAATTACTGGGGATATCATGCACTTTTGATCAAGCGATTCAGCGTGTTGCAGCATCTGTGAAAATGGTGGCAAAAGGTGTTCTTAGAGAGCATCTAATTTTGTTAGCTAGTAGTATGACATGTGGCGGGAACATGGTTGGCTTTAATACAGGTGGATATAAAGCCCTGTCTCGACAACTAAATATTCAAGTACCATTCACAGATGCAACACTCTTTACACCTAAAAAGTGTTTTGAGCGAGCTGCTGAGAAATGTCATACTGACTCTCTGTCTAGCATAGTTGCATCCTGTTCCTGGGGTAAACCTGTGGCTGTTGGCACAGGATCAAAATTTGATGTTGTTTGGGATGGAAATAAGATAAGATCAAGTGAAATTGAAGGGATGGATGTTTACAGTTTTCTTCACATGGTTAAAGGCCACACCGACAGGGAAGAAGAAACTGATGCTTGTTTGGGTGAAGATATTGATGATTTGCTGGAAGAAGAAAATTTGTATTTGGAAATGTCCCCACCACGTAACTCTGGTTTTGAGGCTGTCTTTGAAGAGAATCCTGAGGTACTAAATGATTCAACATCCAATGGTTGGGATGTAAATTCAAATCAGACCAAATCAAAAACCAATGGTTGGTCTGGTTGGGTAAGTAACAAAGCTGAAACAAATGAAGGAAGATCCGAAAGTGCCCAGGAGAGTTCTTGGGGGAAAACTGTCACACAAGAAGACTCTTCTAAGTCTGGTGCTTGGAATACAAATACAACAGGTCAGACAAATACTAGATCTAATGAATGGTCTGTCCGGGAAAGTAATAAGTCAGAAATTCAAGCTGGTGAATCTGAGAAGGTTGAAGGTTCATGGGGCTCGGGTAAAACGAAAGATGTTACCCAAAAAGATAATTTTGGGTCTGGTGGTTGGGGTGCAAACAAAACAGATCAGGCAAAAACAAAATCTAATGAATGGTCTAGCTGGGGAAACAATAATTCTGAAATATTAGCTGGTGGATCTGAAAATATGCAAGACTCTTGGGGCTCGGGTGGGAGGAAAGATGTTACCCAAGAAGGCAATTTGACATCTGGTGCTTGGGGTGCAAACATAGATCAGACAAAAACAAAATCTAATGAATGGTCTGGCTGGGGAAAGAATAAGTCTGAAATACCAGCTGGTGGATCTGAAAGTGTGCAGGGTTCTTGGGGATCTGATAAGTGGAAAGATGGTGTTACCCAAGTAGACAACTCTGCATCTGGTTCTTGGGGTGGAAACAGAAGAGATCAGACAAAAGCAAAATCTGATGAATGGTCTGGCTGGGGAAGGAATAAAGCTGAAATGCCAGCTGGTGGATCTGAAAATGTGCAAGAAGATTCTTGGGGCTCTGGTAAATTGAGAGATGATGTTACTGAAAAAGACAATTCTGGGTCTGGTGCTTGGGGTGGAAACAGAAGAGATCAGACAAAGACAAAATCTAATGAATGGTCTGGCTGGGGAAGGAATGAATTGGAAATACCTGCTGGTGGTTCTGAAAATGTACAAGAAGATTCTTGGGGCTCAGGTAAATTGAAAGATGATGTTACCCAAAATGACAATTCTGGATCTGGTGCCTGGGGTGCAAGCAGCACAGGTCAGACAAAATCAAAATCTAATGAATGGTCTGGCTGGGGGAAGAATAAGTCTGAAATACCAGCTGGTGGATCTGAAAATGTGCAGGATTCTTGGGGCTCTTGTAAGAGGAAAGATGTTGCCCAAGTAGACAACTCCGTGTCTGGTTCTTGGGGTGGAAGCAGAAGAGATCAAACTAACACGACATCTAATGAATGGTCTGGCTGGGGGAGGAATAAATCGGAAATACCAGCTGGTGGATGTGAAAATGTACAGGAAGATTCTTGGGGCTCAGGTAAGTTGAAAGATGATGTTACCCAGAAAGACAATTCTGGGTCTGGTGCTTGGGGTGCAAACAAAACAGGTTTGGCAAAAACTGAAGTAGATGAGTGGGCCAGAAATAAAATTGAAACAGTAGACGGTGGGTCGGAGAAGCTCCAAGAGGATTCTTGGAACTCAGGTAATTTGAAATCTGAATCAAAGGTTGGCAATGCCTCTTGGGGAAAACCCAACTCCTCTGGAAGTCAATCATGGGATTCCCATAATCAGTCAAATCAAAATTCCAGTTCTCTGGGATGGGAATCACATATTGCTTCAGCTAATTCAGACAGTGAGAAAGGTTTTCAGTGGGGTAAGCAAGGTAGAGAATCTTTTAAGAAAAATCGCTTTGAAGGTTCACAAGGTCGGGGTTCAAATAGTGGCGACTGGAAAAATAGGAATCGCCCACCTAGAACACCTGGACAGAGATTGGACTTATACTCATCTGAGGAACAGGATGTGCTGAGGGAGATTGAACCTATTATGCAGTCTATCAGACGAATCATGCAACAACAAGGGTACAACGATGGGGACCCGCTGGCTGCTGAAGATCAACTTTTCGTACTTGAGAATGTCTTTGAGCACCACCCAGATAAAGACACCAAAATGGGTGCTGGAATTGATTATGTCATGGTTAACAAACACAGCAGCTTTCAGGATAGCAGATGCTTCTATGTGGTTTTGAAAGATGGTCGAAGAGAAGATTTTTCCTACCGGAAATGCTTGGATAACTGGATAAGAAAGAAGTATCCAGACCGTGCCGAATCCTTCCTCGGCAAATATTTTCGGAAACCCCGTAATAGGGTGGAGCAAACTGCAAACCCAAGGGGGGACCAGACTGCAATGCCACTGCGAGACGAAGCTAGTACACCGGCTGACCAGACCTCAACACCCGGCCCTGCGGAAACCAATGAGTAG 6162 0.4143 MEDNPPSSVLDGMVVGVKFGMATRQEICTASISDSSISHASQLSNPFLGLPLEFGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHISELKRLLSLVCLNCLKMRKTKLSASGSGLAQRLVSPCCEEVNAAQISIREVKTSDGACYLALKVSKTKMHPDFWGFLEKYGYRYEGDHTRALLPCEAMEIIKRIPIETKKKLAGKGYFPQDGYVFKYLPVPPNCLSVPEVSDGISVMSSDPSMTILRKLLRKVEIIKSSRSGEPNFESHHIEANDLQSVVEQYLQIRGTSKAARDTETRFGVNKELSASSTQAWLEKMRTLFIRKGSGFSSRNVITGDCYKRINEVGIPVEVAQRVTFEERVNIHNISYLQKLVDENLCLTYKEGVSTFSLREGSKGHIYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALFVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVENQLLSSHSGNLNLQLSTDSLLSLKMLVKRCVFDRAAANQFAMFLLPLPRPGLIKASSGDSYWTSIQMLQCALPLCFDCSGGRYLIRQSEILEFDFNRDVLPATINEIAASIFFSKGPKEALKFFDVLQPFLMESIFADGFSVSLQDFSISKAIKRIISRSIGKVSSLLYQLRSIYNELVAQQLEKLIRDIENPVINFALKSTKLGDLIDSKSKSAIDKVVQQIGFLGQQLFDRGRFYSKGLVEDVASHFHVKCCYDGDGYPSAEYGLLKGSFFNGLDPYEEMVHSISTREVMVRSSRGLSEPGTLFKNLMAILRDVVICYDGTVRNICSNSIIQFEYGLEKTEHLFPAGEPVGVLAATAMSNPAYKAVLDASPNSNSSWELMKEILLCKVNFRNEPADRRVILYLNDCDCGGNYCRENAAYKVKDQLRKVNLKDAAVEFVIEYQEQRIQKGNSETDAGLVGHIYLDEMMLEELKISMANVFQKCLERLKSFSPRKKANQFLKRTELSFSESCSSSHPAAPCLTFIWVDDRNNEFDYIVKILSEKICPVLLETIIQGDPRISSASIIWVTPDTNTWVRNPYKSSNGELALDIILEKEVVKQSGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQTQELLGISCTFDQAIQRVAASVKMVAKGVLREHLILLASSMTCGGNMVGFNTGGYKALSRQLNIQVPFTDATLFTPKKCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSKFDVVWDGNKIRSSEIEGMDVYSFLHMVKGHTDREEETDACLGEDIDDLLEEENLYLEMSPPRNSGFEAVFEENPEVLNDSTSNGWDVNSNQTKSKTNGWSGWVSNKAETNEGRSESAQESSWGKTVTQEDSSKSGAWNTNTTGQTNTRSNEWSVRESNKSEIQAGESEKVEGSWGSGKTKDVTQKDNFGSGGWGANKTDQAKTKSNEWSSWGNNNSEILAGGSENMQDSWGSGGRKDVTQEGNLTSGAWGANIDQTKTKSNEWSGWGKNKSEIPAGGSESVQGSWGSDKWKDGVTQVDNSASGSWGGNRRDQTKAKSDEWSGWGRNKAEMPAGGSENVQEDSWGSGKLRDDVTEKDNSGSGAWGGNRRDQTKTKSNEWSGWGRNELEIPAGGSENVQEDSWGSGKLKDDVTQNDNSGSGAWGASSTGQTKSKSNEWSGWGKNKSEIPAGGSENVQDSWGSCKRKDVAQVDNSVSGSWGGSRRDQTNTTSNEWSGWGRNKSEIPAGGCENVQEDSWGSGKLKDDVTQKDNSGSGAWGANKTGLAKTEVDEWARNKIETVDGGSEKLQEDSWNSGNLKSESKVGNASWGKPNSSGSQSWDSHNQSNQNSSSLGWESHIASANSDSEKGFQWGKQGRESFKKNRFEGSQGRGSNSGDWKNRNRPPRTPGQRLDLYSSEEQDVLREIEPIMQSIRRIMQQQGYNDGDPLAAEDQLFVLENVFEHHPDKDTKMGAGIDYVMVNKHSSFQDSRCFYVVLKDGRREDFSYRKCLDNWIRKKYPDRAESFLGKYFRKPRNRVEQTANPRGDQTAMPLRDEASTPADQTSTPGPAETNE 2053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g02177 2053 MobiDBLite consensus disorder prediction 1851 1865 - -
Phco9g02177 2053 MobiDBLite consensus disorder prediction 1619 1663 - -
Phco9g02177 2053 MobiDBLite consensus disorder prediction 1787 1850 - -
Phco9g02177 2053 Pfam RNA polymerase Rpb1, domain 5 755 1168 IPR007081 GO:0003677|GO:0003899|GO:0006351
Phco9g02177 2053 MobiDBLite consensus disorder prediction 1866 1881 - -
Phco9g02177 2053 Gene3D RNA polymerase Rpb1, domain 3 487 621 IPR042102 -
Phco9g02177 2053 Pfam Protein of unknown function (DUF3223) 1921 1990 - -
Phco9g02177 2053 Pfam RNA polymerase Rpb1, domain 3 482 626 IPR007066 GO:0003677|GO:0003899|GO:0006351
Phco9g02177 2053 Gene3D - 1900 1996 - -
Phco9g02177 2053 MobiDBLite consensus disorder prediction 1516 1533 - -
Phco9g02177 2053 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 14 1230 - -
Phco9g02177 2053 Pfam RNA polymerase Rpb1, domain 1 43 281 IPR007080 GO:0003677|GO:0003899|GO:0006351
Phco9g02177 2053 MobiDBLite consensus disorder prediction 2037 2053 - -
Phco9g02177 2053 MobiDBLite consensus disorder prediction 2014 2053 - -
Phco9g02177 2053 Pfam RNA polymerase Rpb1, domain 2 325 478 IPR000722 GO:0003677|GO:0003899|GO:0006351
Phco9g02177 2053 Gene3D - 795 824 - -
Phco9g02177 2053 Gene3D RNA polymerase ii 354 406 - -
Phco9g02177 2053 MobiDBLite consensus disorder prediction 1582 1603 - -
Phco9g02177 2053 MobiDBLite consensus disorder prediction 1690 1719 - -
Phco9g02177 2053 MobiDBLite consensus disorder prediction 1299 1894 - -
Phco9g02177 2053 PANTHER DNA-DIRECTED RNA POLYMERASE 18 1228 IPR045867 GO:0003899|GO:0006351
Phco9g02177 2053 MobiDBLite consensus disorder prediction 1768 1786 - -
Phco9g02177 2053 MobiDBLite consensus disorder prediction 1299 1383 - -
Phco9g02177 2053 Gene3D - 322 486 - -
Phco9g02177 2053 Gene3D RNA polymerase II, clamp domain 12 119 IPR044893 -
Phco9g02177 2053 SMART rpolaneu7 208 507 IPR006592 GO:0003677|GO:0003899|GO:0006351
Phco9g02177 2053 MobiDBLite consensus disorder prediction 1400 1490 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g02177 Phco-Chr9 47150518 47167530 Dispersed/Transposed