Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g02176 ATGGCTTCTTCTTCTTTGGTTGTTGTTGGACCTCTTAACCTCACTCAACAAAATGGTTACAAAGTGTGGGAAGATCCTTCTTTCATCAAGTGGAGGAAAAGGGACCCTCATGTCACCTTGCACTGCCATGACTCTCTAGAAGGATCTCTCAAATATTGGTATCAACGGAACAAAGTGGATTTTTTGGTTTCCCAGTCTGCTGTTTGGAATGATGATGCTGTTCAGGGGTCTCTTGATTGTGCTGCATTTTGGGTCAAAGATTTGCCTTTTGTTAAGTCCTTGTCTGGATATTGGAAATTCTTCATCGCTGACAGGCCCAGCAATGTCCCTACTAATTTTTATGAAACCGAGTTCCACGATTCAGAGTGGAAAAATTTGCCTGTTCCTTCGAATTGGCAGTTACACGGATTTGACATTCCTATATATACGAACGTGGTGTATCCATTTCCGGTAGATCCTCCTTTCATTCCAATGGACAATCCTACTGGCTGTTACAGAACGTACTTCCAAATTCCTAAAGAATGGGAGGGTAGAAGAATTTTGTTGCATTTTGAAGCAGTTGATTCTGCCTTTTGTGCATGGATAAATGGGCATCCTGTAGGATATAGCCAAGACAGCAGACTACCTGCAGAGTTCGAAATCACTGATTTTTGTCATCCATGTGGTTCAGATCTTAAGAATGTTCTTGCTGTTCAAGTCTATAGATGGAGTGATGGCTCTTACCTTGAGGACCAGGACCAATGGCGGTTATCCGGCATCCACCGTGATGTTCTTCTTATGGCAAAGCCAGAGGTCTTTGTTACTGACTATTTTTTCAAAACAAATCTCGCTGAAGATTTTTCTTATGCAGATATACTGGTTGAAGTAAAAATAGATAGATTAAAAGAGACATCCAAGGATAATGTTCTCACAGACTACTCTATAGAAGCTACATTGTTTGATTCTGGAAGCTGGTACACCTCTGAAGGCATTGCTGATCTCCTTTCATCTAATGTGGCAGACATAAAGCTCCAACCATCAAGTACACCAGCACCGACATTAGGGTTTCATGGCTACGTGCTTACGGGGAAACTGCAATCACCAAAGCTTTGGTCTGCAGAGAAACCATACCTCTATACTCTAGTTGTTGTCTTGAAAGACCAATCTGGTCGTGTTGTTGACTGTGAATCATGTCCAGTAGGATTTAGAAAAGTATCTAAAGCCCACAAACAACTGCTTGTTAATGGACATGCTGTTGTAATTAGAGGTGTGAACAGGCATGAGCATCATCCTCAAGTGGGGAAGGCAAACATAGAATCCTGCATGATCAAGGATCTGGTCCTGATGAAGCAAAATAATATTAATGCCGTGAGGAACAGCCATTATCCCCAACATCCACGTTGGTATGAGCTATGTGATTTGTTTGGCATGTACATGATAGATGAAGCCAATATTGAGACACATGGTTTTGACTATTCTAAACATCTCAAGCATCCTACTTTGGAACCAATTTGGGCATCTGCAATGCTGGATCGTGTGATTGGCATGGTTGAGAGAGATAAAAATCACACATGCATTATCTCGTGGTCTTTAGGGAATGAATCTGGATTCGGAACAAATCATTTTGCTTTAGCTGGTTGGATTCGAGGACGAGATTCATCGCGGGTATTACATTATGAAGGAGGTGGATCCAGGACTCCATGCACTGATATTGTGTGTCCTATGTATATGCGTGTTTGGGACATGGTGAAAATAGCCAATGATCCAACTGAAACACGTCCTCTGATACTATGCGAATATTCACATGCAATGGGAAACAGTAATGGAAATCTTCATACATATTGGGAAGCAATTGACAACACATTTGGACTCCAAGGAGGCTTTATTTGGGATTGGGTTGATCAGGCGCTGGTTAAAGTTTATGAAGATGGTACAAAGCATTGGGCATATGGAGGTGAATTCGGGGATGTTCCCAATGATTTGAATTTCTGTTTGAATGGACTCACATTTCCTGATCGAACTCCTCATCCTGTTTTACATGAGGTTAAGTACTTGTACCAACCAATCAAGGTGGCTTTAAATGAAGGGAAATTGGAGATAAAAAATACTCATTTTTTTCAAACAACAGAAGGATTGGAGTCCAGCTGGTATATTTCTGCAAATGGACATAACCTTGGATCTGGTATTTTGGACCTTGCCCCTATAAAGCCCCAGAGTAGTTATGCTGTTGATTGGGAATCAGGTCCATGGTATTCTCTATGGGCTTCATCATCAGAAGAAGAACTATTCCTAACTTTAACTTTTAAACTTTTGGACTCCACACGTTGGGTTGAAGCTGGTCATATTGTTTCATCTGCTCAAGTTCAATTGCCAGCCAGGAGAAGCATTCTTCCGCATGCTATTGATATTAGTGGTGGCACTCTGGTTGCTGAAACACTAGGAGATACAATCATAGTCAAACAGCAAGATGTTTGGGATTTGACATTGAATACTAGAACAGGTTTAGTTGAAAGCTGGAAGGTTAAAGGAGTACATATTTTGAAAAAGGGCATCCTCCCATGTTTCTGGCGAGCTCCTATAGATAATGATAAAGGAGGAGAGGAAGCCAGTTATTTGTCCAGGTGGAAAGCTGCTGGAATGGACTGCCTCCAGTTTATTACTGAGAGCTGTTCTGTGCAAAATATTAGCGAGAACTCGGTTAGAATATTGGTGGTTTTTCTTGGTGTTACAAAGGGTGCAGAGGGTTCTCTCTCTAACCAAGACAAGTCAAAGGTTTTATATACTTCAGAAGTGACATATACAATTTATGCTTCTGGGGATGTTATTATAGAATGCCACGTGAAGCCAAATCCTGATCTCCCTCCTTTACCACGCGTGGGAATTGAGTTAAATGTGGAAAAATCATTGGATATGGTAACTTGGTATGGAAGAGGACCATTTGAGTGTTATCCAGATCGAAAAGCTGGAGCCCAAGTTGCAGTCTATGAACATAATGTTAGTGAGCTGCATGTTCCTTATATTTTTCCCGGAGAATCTTCTGGCAGGGCAGACGTTAGGTGGGCAACATTCAGAAACAAAAATGGTTTTGGAATATATGCTTCTAGGTATGGTAGCTCTCCACCCATGCAAATGAGTGCAAGCTACTATAGCACCTCAGAACTTGCCCGTGCCACACACAATGAAGAGCTCATTGAAGGAGATAGCATTGAGGTTCATCTGGATCACAAGCATATGGGATTAGGTGGAGATGATAGTTGGTCGCCATGTGTCCACAATAATTATTTGATTCCTCCTGTGTCATATTCATTCTCTGTTAGATTGTGTCCTGTAACTCCAGCCACTTCTGGGTATGACATCTACAAATCCCAGCTTCAAGACTCTTGA 3363 0.4148 MASSSLVVVGPLNLTQQNGYKVWEDPSFIKWRKRDPHVTLHCHDSLEGSLKYWYQRNKVDFLVSQSAVWNDDAVQGSLDCAAFWVKDLPFVKSLSGYWKFFIADRPSNVPTNFYETEFHDSEWKNLPVPSNWQLHGFDIPIYTNVVYPFPVDPPFIPMDNPTGCYRTYFQIPKEWEGRRILLHFEAVDSAFCAWINGHPVGYSQDSRLPAEFEITDFCHPCGSDLKNVLAVQVYRWSDGSYLEDQDQWRLSGIHRDVLLMAKPEVFVTDYFFKTNLAEDFSYADILVEVKIDRLKETSKDNVLTDYSIEATLFDSGSWYTSEGIADLLSSNVADIKLQPSSTPAPTLGFHGYVLTGKLQSPKLWSAEKPYLYTLVVVLKDQSGRVVDCESCPVGFRKVSKAHKQLLVNGHAVVIRGVNRHEHHPQVGKANIESCMIKDLVLMKQNNINAVRNSHYPQHPRWYELCDLFGMYMIDEANIETHGFDYSKHLKHPTLEPIWASAMLDRVIGMVERDKNHTCIISWSLGNESGFGTNHFALAGWIRGRDSSRVLHYEGGGSRTPCTDIVCPMYMRVWDMVKIANDPTETRPLILCEYSHAMGNSNGNLHTYWEAIDNTFGLQGGFIWDWVDQALVKVYEDGTKHWAYGGEFGDVPNDLNFCLNGLTFPDRTPHPVLHEVKYLYQPIKVALNEGKLEIKNTHFFQTTEGLESSWYISANGHNLGSGILDLAPIKPQSSYAVDWESGPWYSLWASSSEEELFLTLTFKLLDSTRWVEAGHIVSSAQVQLPARRSILPHAIDISGGTLVAETLGDTIIVKQQDVWDLTLNTRTGLVESWKVKGVHILKKGILPCFWRAPIDNDKGGEEASYLSRWKAAGMDCLQFITESCSVQNISENSVRILVVFLGVTKGAEGSLSNQDKSKVLYTSEVTYTIYASGDVIIECHVKPNPDLPPLPRVGIELNVEKSLDMVTWYGRGPFECYPDRKAGAQVAVYEHNVSELHVPYIFPGESSGRADVRWATFRNKNGFGIYASRYGSSPPMQMSASYYSTSELARATHNEELIEGDSIEVHLDHKHMGLGGDDSWSPCVHNNYLIPPVSYSFSVRLCPVTPATSGYDIYKSQLQDS 1120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g02176 1120 Pfam Beta-galactosidase, domain 4 691 784 IPR032312 -
Phco9g02176 1120 FunFam Beta-galactosidase 397 679 - -
Phco9g02176 1120 ProSitePatterns Glycosyl hydrolases family 2 acid/base catalyst. 513 527 IPR023232 -
Phco9g02176 1120 PANTHER BETA-GALACTOSIDASE 16 1116 - -
Phco9g02176 1120 SUPERFAMILY beta-Galactosidase/glucuronidase domain 265 396 IPR036156 -
Phco9g02176 1120 SUPERFAMILY (Trans)glycosidases 401 680 IPR017853 -
Phco9g02176 1120 Gene3D - 12 263 - -
Phco9g02176 1120 SUPERFAMILY beta-Galactosidase/glucuronidase domain 676 786 IPR036156 -
Phco9g02176 1120 SMART Bgal_small_N_2 816 1101 IPR004199 GO:0004565|GO:0005975|GO:0009341
Phco9g02176 1120 Pfam Glycosyl hydrolases family 2 265 396 IPR006102 GO:0004553|GO:0005975
Phco9g02176 1120 Pfam Glycosyl hydrolases family 2, TIM barrel domain 402 683 IPR006103 GO:0004553|GO:0005975
Phco9g02176 1120 FunFam Glycoside hydrolase family 2 protein 800 1102 - -
Phco9g02176 1120 Pfam Glycosyl hydrolases family 2, sugar binding domain 92 263 IPR006104 GO:0004553|GO:0005975
Phco9g02176 1120 Pfam Beta galactosidase small chain 816 1100 IPR004199 GO:0004565|GO:0005975|GO:0009341
Phco9g02176 1120 SUPERFAMILY Galactose mutarotase-like 805 1103 IPR011013 GO:0003824|GO:0005975|GO:0030246
Phco9g02176 1120 ProSitePatterns Glycosyl hydrolases family 2 signature 1. 448 473 IPR023230 -
Phco9g02176 1120 Gene3D - 801 1102 IPR014718 GO:0030246
Phco9g02176 1120 FunFam Glycoside hydrolase family 2 protein 265 396 - -
Phco9g02176 1120 Gene3D Immunoglobulins 265 396 IPR013783 -
Phco9g02176 1120 Gene3D Glycosidases 398 678 - -
Phco9g02176 1120 Gene3D Immunoglobulins 680 788 IPR013783 -
Phco9g02176 1120 PRINTS Glycosyl hydrolase family 2 signature 513 528 IPR006101 GO:0004553|GO:0005975
Phco9g02176 1120 PRINTS Glycosyl hydrolase family 2 signature 586 601 IPR006101 GO:0004553|GO:0005975
Phco9g02176 1120 PRINTS Glycosyl hydrolase family 2 signature 438 456 IPR006101 GO:0004553|GO:0005975
Phco9g02176 1120 PRINTS Glycosyl hydrolase family 2 signature 187 202 IPR006101 GO:0004553|GO:0005975
Phco9g02176 1120 PRINTS Glycosyl hydrolase family 2 signature 407 421 IPR006101 GO:0004553|GO:0005975
Phco9g02176 1120 SUPERFAMILY Galactose-binding domain-like 91 263 IPR008979 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g02176 Phco-Chr9 47139240 47147559 Dispersed