Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g02172 ATGAACATGTTAGGCCTTAGAGACTTAGTTTTCATAGCTCCAACTGCTTCTCAACTTCACCACCATCAACACCAACACCAACACCACCATCCCATTTCAGGAGAACATCATCCCAATCTTCCCTTGCCTTCTCCAGCATCTCTCAGCGTTGGCCTTGGCATTTTTCCTCTCCTAACAGTTCCACACACCAATGATGTTCATGATCAGGTTCAAGACTGTGCCAACAACAACAACAACACCAACGCCACCAACCACAACACCAACTATTGGAACCTCAAGATGTGTGGTGTCTCAGAAGTGAATTCCACAAGAAAAGGTGTGATGAACGTTCAAGATGAGGGGAGGAGTAACAAGCATGTGATGGAGACTGAGGAAAGTGGTGAGTTTAGGGTGTGTCAGGATTGTGGCAATAGGGCCAAGAGGGATTGCAGCTATAAAAGGTGCAGGACTTGTTGCAAAGGACGTGGCTTTGATTGCAACACTCACGTGAAGAGTACATGGGTCCCCGCCTCTCTGAGACGCAGTGGTGGTAATAGTGGTAGTGATGGTAACGGTGATGGAGATGGTGATGGTGGTGCTTCTAAGAGGCTAAGAACAATAGGGTCATCCAAGAATGCTGCAGCTACTTCTCTTAGTTCCACTTCCAATGCTACCCCGACAAAGAGCTTTAGCTTAGACACCAGCTCTTGTCAACAAGATGCTGGATTCAAGCAATCTTTGCCACGGCATGTGCGTGCACCTGCTGTGTTCAGGTGCCATAGAGTGTCTGCTATTGGGAGTGGTGAAGATGAGATTGCCTATTTGGCCACTGTGCATATCAGTGGCCATGTGTTCAAGGGGTTTCTGTATGATCATGGTGCTGATGCCAGAAATGATGTGCCTAGTATCTCTGAACTGCAACTGGGAAACAATGGAAGTGGAAAGAGTAATAACAGGGAATGTTTTTCTGCAATTGGGGTTCCAACCAGTGCTTACCCTGCTTCTGTTTGCTGA 993 0.4713 MNMLGLRDLVFIAPTASQLHHHQHQHQHHHPISGEHHPNLPLPSPASLSVGLGIFPLLTVPHTNDVHDQVQDCANNNNNTNATNHNTNYWNLKMCGVSEVNSTRKGVMNVQDEGRSNKHVMETEESGEFRVCQDCGNRAKRDCSYKRCRTCCKGRGFDCNTHVKSTWVPASLRRSGGNSGSDGNGDGDGDGGASKRLRTIGSSKNAAATSLSSTSNATPTKSFSLDTSSCQQDAGFKQSLPRHVRAPAVFRCHRVSAIGSGEDEIAYLATVHISGHVFKGFLYDHGADARNDVPSISELQLGNNGSGKSNNRECFSAIGVPTSAYPASVC 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g02172 330 MobiDBLite consensus disorder prediction 198 224 - -
Phco9g02172 330 NCBIfam LRP1 C-terminal domain 240 286 IPR006511 -
Phco9g02172 330 NCBIfam putative zinc finger domain, LRP1 type 131 172 IPR006510 -
Phco9g02172 330 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 45 313 IPR007818 GO:0003700|GO:0006355
Phco9g02172 330 MobiDBLite consensus disorder prediction 170 224 - -
Phco9g02172 330 MobiDBLite consensus disorder prediction 17 41 - -
Phco9g02172 330 Pfam Domain of unknown function (DUF702) 131 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g02172 Phco-Chr9 47109438 47110986 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Phco9g02172 DUF702 2.2e-52 No_clan