Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g02063 ATGGAAGAAGGGTTGTGCCAAAACTCAGTTCCTGGTTCTGGTTTGGTTGATAGAACTAGGATTGTAGAGGTTAAACCCCTGCGTAGTTTGGCACCTGTGTTGCCAAAATCTCTTCAACTTTCTACCTCTGCACGGTACCCATCTGGGTTTCCTCCATTTGTTTTGTTTGAGGAACCCGAAGAGTCTCAGCCATCACCAACTCATATGCCAACTCCAATAAGGTCCTACAGGAAGCCACTAGATGGTGAAGAAGAAACCCCTGGTGGAGTTAGTGGAGACACTTCTTCACCTATGGAGCGTGTCAATGGCAAGAGTGTGGACGATAGCCCAAAGCGTCCTGTGCAGCATATGAAGAACTGCAAATCATCCCAAAAAAGGCGTACAAAAACTCAGGATTTTGGTTCCAGTTCTTCGGTTGGTGGTATTAGCATAACCCAAAGGGATGATGGTGATCGGGAAGTGGTTAATCTTGTGCTCATGACATTTGATTCTCTTCGGAGAAGGCTCTGCCAACTTGAAGATTCCAAGGAGTTGAACACATTATTGGGAGCCAAGCGCCCGGATTTAAGAGCAAGCAATGTGATGACAGGCAAAGCATTTCGCACAAACATGAGGAGGAGAGTAGGAGCAGTGCCTGGGGTTGAGATTGGGGATATTTTCTTTTTGCGGATGGAAATGTGTCATGTGGGTTTACATGCCCAGACAATGAGTGGAATTGACTACATGAGTGCCAAGGATGAGCTTCAGGAGGAACCGGTTGCTTTAAGCATTGTCTCTTCAGGAGTGTATGATAATGATGCAGAGGATGAAGATGTTTTAATTTATACTGGTCAGGGTGAGAACTTCAACAAGAAAGACAAGCATGTGGTTGATCAGAAGCTTCATAGGGGTAATCTTGCTTTAGATAGAAGTTCATACCGAAAGAATGAAGTAAGAGTTATCCGGGGCTTGAGAGATGCTGGGAATAAAAATGCAAAAGTCTATGTCTATGATGGTCTGTATAAAATCCAAGATTCTTGGATAGAAAAAGGGAAGTCTGGTGGTGGTGTATTCAAGTACAAGTTTGTTAGATTGCCTGGTCAACCTAGTGCTTTTGCTGTTTGGAAATCAATTCAGAAGTGCAAGACAGGCTCATCTTCAAGGACTGGCCTTATTCTTGCTGACCTCTCCACAGGAGTTGAGAGTATTCCTGTATCACTTGTCAATGATGTTGATAACGAGAAGGGGCCTTCTTTTTTCACCTATTCCAATTCTCTCAGAGATTCAAAACCATTCAGTTTAGTGCAATCTTCATATGGCTGTAACTGTAACAAAACATGTGTCCCTGGTGATTTGAGCTGCTCTTGCATCCAAAGAAATGAAGGCGACTTTCCATATATTGCAAATGGTGTTCTAGTGAGTCGTAAACCATTGGTTCATGAGTGTGGCCCAATGTGTAAGTGCTTTCCTAACTGCAAGAATAGAGTATCGCAGACAGGTTTGAAGCTCCAAATGGAAGTTTTCAAAACTGAAAATAGAGGGTGGGGACTGCGATCATTTGATCCTATACGTGCTGGTACTTTTATTTGTGAGTATGCAGGAGAAGTAGTTGATAGAACCAAGGTATATAAGAATGGGGGATTTAATGATGAGTATGTTTTTGATACAAGTCGTATTTACAATCCATTCAAATGGAATTACGAGCCCAGCTTATTGGAGGAAATAAGCTCAAATGTCTCTACTGAGGATTATACTATACCGTCTCCTCTAATTATCAGTTCTAAAAATTTTGGAAATGTGGCTAGATACATGAATCATAGTTGCTCCCCAAATGTTTTCTGGCAGCCAGTCTTGTATGCAGAAAATAATCAATACTTTCTTCACGTTGTATTTTTTGCCCTTGGACACATTCCTCCAATGACAGAGTTAACATATGATTATGGTTGTTCTGGTCATGGTGATGGTAGTAGTGCACCTCAAGGGATAAAGAAATGTTTGTGTGGATCCTCAAAATGCCGTGGTTCTTTTGGTTGA 2013 0.4198 MEEGLCQNSVPGSGLVDRTRIVEVKPLRSLAPVLPKSLQLSTSARYPSGFPPFVLFEEPEESQPSPTHMPTPIRSYRKPLDGEEETPGGVSGDTSSPMERVNGKSVDDSPKRPVQHMKNCKSSQKRRTKTQDFGSSSSVGGISITQRDDGDREVVNLVLMTFDSLRRRLCQLEDSKELNTLLGAKRPDLRASNVMTGKAFRTNMRRRVGAVPGVEIGDIFFLRMEMCHVGLHAQTMSGIDYMSAKDELQEEPVALSIVSSGVYDNDAEDEDVLIYTGQGENFNKKDKHVVDQKLHRGNLALDRSSYRKNEVRVIRGLRDAGNKNAKVYVYDGLYKIQDSWIEKGKSGGGVFKYKFVRLPGQPSAFAVWKSIQKCKTGSSSRTGLILADLSTGVESIPVSLVNDVDNEKGPSFFTYSNSLRDSKPFSLVQSSYGCNCNKTCVPGDLSCSCIQRNEGDFPYIANGVLVSRKPLVHECGPMCKCFPNCKNRVSQTGLKLQMEVFKTENRGWGLRSFDPIRAGTFICEYAGEVVDRTKVYKNGGFNDEYVFDTSRIYNPFKWNYEPSLLEEISSNVSTEDYTIPSPLIISSKNFGNVARYMNHSCSPNVFWQPVLYAENNQYFLHVVFFALGHIPPMTELTYDYGCSGHGDGSSAPQGIKKCLCGSSKCRGSFG 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g02063 670 Pfam SAD/SRA domain 208 361 IPR003105 -
Phco9g02063 670 ProSiteProfiles Pre-SET domain profile. 432 493 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Phco9g02063 670 FunFam Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 191 376 - -
Phco9g02063 670 ProSiteProfiles YDG domain profile. 209 357 IPR003105 -
Phco9g02063 670 SUPERFAMILY SET domain 395 667 IPR046341 -
Phco9g02063 670 Pfam Pre-SET motif 390 488 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Phco9g02063 670 MobiDBLite consensus disorder prediction 55 145 - -
Phco9g02063 670 SUPERFAMILY PUA domain-like 191 379 IPR015947 -
Phco9g02063 670 Gene3D - 191 377 IPR036987 -
Phco9g02063 670 SMART set_7 496 647 IPR001214 GO:0005515
Phco9g02063 670 Pfam SET domain 507 641 IPR001214 GO:0005515
Phco9g02063 670 SMART preset_2 386 480 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Phco9g02063 670 ProSiteProfiles Post-SET domain profile. 654 670 IPR003616 -
Phco9g02063 670 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 78 664 - -
Phco9g02063 670 ProSiteProfiles SET domain profile. 496 641 IPR001214 GO:0005515
Phco9g02063 670 MobiDBLite consensus disorder prediction 129 144 - -
Phco9g02063 670 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 22 670 IPR025794 GO:0016571
Phco9g02063 670 SMART G9a_1 204 361 IPR003105 -
Phco9g02063 670 Gene3D SET domain 378 669 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g02063 Phco-Chr9 45654175 45656187 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Phco9g02063 SAD_SRA 4.6e-48 CL0178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g02063 9 45654175 45656187 Phco9g02063 9 45654175 45656187 ECH
Phco10g00132 10 1044284 1046278 Phco9g02063 9 45654175 45656187 PCT