Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g02059 ATGGAAGAGGAGAATGTTAATCAGCCATTGTTGGAGAAGAAGAAGAAGTACTACGAGAACTGCCCTGGTTGTAAAGTGGATAAAGGCAACGAGTTGAGTGAGGGACAAGGTGTACCCTTCACAAAGCTTTTCATCGTGTGGATGCTGGTGCTTTGTGCTGCATTGCCAATATCATCTCTCTTTCCATTCCTTTATTTCATGGTAAGGGATTTTAATATTGCGAAAACAGAAGCTGATATTAGTTCTTATGCTGGTTACGTGGGTTCTGCATATATGCTTGGCAGATGTTTGACATCTTTATTTTGGGGAACTATAGCTGATCGCATTGGTCGAAAACCTGTTATAATTATAGGAATTATTTCAGTCATCATTTTCAACACACTATTTGGCCTTAGCACAAGTTTTTGGATGGCTGTTATCGTGAGGTTTCTTATGGGAAGTTTAAATTGTTTGCTTGGACCAGTGAAGGCCTATACCACTGAACTTTTTCGAGAAGAACACCAAGCTCTTGGACTCTCAACCGTAAGTGCAGCTTGGGGCATAGGTTTAATAATTGGCCCAGCATTGGGAGGCTATTTGTCTCAGCCAGTAGAAAAGTACCCTCATATATTTCCAAAGGATAGCTTTTGGGATAAGTTTCCATACTTCTTACCCAATTTTGTAATATCAGCACTTGCATCTGTAGTAGCAATTGGCTGCATCTGGATTCCGGAAACACTTCACAACCACAATTGTAGCAATGAATCCATAGAAGATGCCAAAGCTTTAGAAAATGGAAACAATGGAGCTGACAATGAAAATATCCAAAAAAATGAAAACCTCTTCCTTAATTGGCCCTTAATGTCATCTATCATTGCATATTGCATTTTCTCACTTCATGATATTACTTATCTAGAGGTTTTCTCCTTATGGGCTGTTTCTCCTCAATGGTTTGGGGGTTTAAACTTTACAACTGATAATGTTGGTAATGTTCTTTCAATATCAGGTCTTGCACTTATCATTTACCAACTTACCATATATCCATATGTGGAAAGAGCTAGTGGACCTATCTCGCTTGCCCGCATCTCATCTATTTTATCCATACCTCTTTTGCAAAGCTACCCCTTCATAGCATTGTTGTCAGGCTTAGCACTATACATAGTGTTAAGTATTTGTTCAATTCTAAAGAATATTTTGTCTATCACCATTATAACTGGTTTGCTCCTTCTACAAAATCGAGCAGTGGAACAACACCAAAGAGGTGCAGCTAATGGAATTGCTATGACAGGCATGTCTCTATTCAATGCTATTGGCCCTGCTACAGGTGGTACAGTATTAACTTGGTCTCAAAAGCGGTTGGACGCTTTCTTTCTACCAGGCACACATATGGTGTTCTTTGTCCTGAACATAGTTCAAGCACTTGGATTACTCATGCTGTTCAAACCATTCCTTGTTGAAAAGAAGAAAACACACACAGATCAGTTACACTGA 1470 0.3925 MEEENVNQPLLEKKKKYYENCPGCKVDKGNELSEGQGVPFTKLFIVWMLVLCAALPISSLFPFLYFMVRDFNIAKTEADISSYAGYVGSAYMLGRCLTSLFWGTIADRIGRKPVIIIGIISVIIFNTLFGLSTSFWMAVIVRFLMGSLNCLLGPVKAYTTELFREEHQALGLSTVSAAWGIGLIIGPALGGYLSQPVEKYPHIFPKDSFWDKFPYFLPNFVISALASVVAIGCIWIPETLHNHNCSNESIEDAKALENGNNGADNENIQKNENLFLNWPLMSSIIAYCIFSLHDITYLEVFSLWAVSPQWFGGLNFTTDNVGNVLSISGLALIIYQLTIYPYVERASGPISLARISSILSIPLLQSYPFIALLSGLALYIVLSICSILKNILSITIITGLLLLQNRAVEQHQRGAANGIAMTGMSLFNAIGPATGGTVLTWSQKRLDAFFLPGTHMVFFVLNIVQALGLLMLFKPFLVEKKKTHTDQLH 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g02059 489 PRINTS Tetracycline resistance protein signature 115 139 IPR001958 GO:0022857
Phco9g02059 489 PRINTS Tetracycline resistance protein signature 172 194 IPR001958 GO:0022857
Phco9g02059 489 SUPERFAMILY MFS general substrate transporter 43 483 IPR036259 -
Phco9g02059 489 CDD MFS_SLC46_TetA_like 46 474 - -
Phco9g02059 489 ProSiteProfiles Major facilitator superfamily (MFS) profile. 42 480 IPR020846 GO:0022857
Phco9g02059 489 Gene3D MFS general substrate transporter like domains 41 472 IPR036259 -
Phco9g02059 489 PANTHER MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 10 37 471 - -
Phco9g02059 489 FunFam Protein ZINC INDUCED FACILITATOR-LIKE 1 41 472 - -
Phco9g02059 489 Pfam Major Facilitator Superfamily 46 432 IPR011701 GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g02059 Phco-Chr9 45589602 45597588 Dispersed/Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g02059 9 45589602 45597588 Phco9g02059 9 45589602 45597588 ECH