Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g02040 ATGAAGAGGTCTCCAGCATCTTCTTGTTCATCATCTTCTTCCTCTGTTGGGTTTGAAGCTCCCATTGCTCAGCAAGGGAAAAGAAGGCCTAGCTATTCAAGGAGGAACTTGAAGTCACAAAAATGCAAGCAGAGCCAAACCACTGGCAGAAGAAGCTCTATCTATAGAGGAGTTACAAGGCATAGGTGGACTGGGAGGTTTGAAGCTCACCTATGGGATAAGAGTTCTTGGAACAACATTCAGAGCAAGAAGGGTAGACAAGGGGCATACGATACTGAGGAAGCTGCAGCCCGTACCTATGATCTTGCAGCCCTGAAGTACTGGGGAAAAGATGCAGTTCTGAATTTTCCGATAGGAAATTATGCAAAGGATATTGAGGAAATGGACAAAGTTTCAAAGGAAGAATATTTAGCTTCTTTGCGGCGCCAAAGCAGTGGTTTTTCTAGAGGCATTTCTAAGTATCGAGGGGTTGCTAGGCATCATCATAATGGGCGTTGGGAAGCACGCATTGGAAGAGTGTGTGGAAACAAGTACCTTTACTTGGGAACATATAAAACTCAAGAGGAGGCAGCAGTGGCATATGACTTAGCAGCAATAGAGTACAGAGGACTGAATGCAGTGACCAATTTTGACATAAGCAACTACATTGACAAAAAGAAAAAAGACCAAACTCATCAAACAGAAACAGTTCCTCCTAACTCCTCAGACTCTGAAGAAGCAGAAGTAGAAGAACAGAAAACTACACCACCCCCTTCTGAAAATCTGCACATGCCACCACTGCAGCACCAAGTTCAACACACACCCCTTGTCTATCATAGGGAAGAATCATCATCACTGGTCACCATTATGGACCATGTGCTTGAACAGGATCTGCCATGGAGCTTCATGTATACTGGGGTGTCTCAGTTTCAAGATCCAGACTTTGCTTTCAGTAAAGCTGATGATTTAGTGGGCATGTTTGATGGTTCAGGATTTGAGGAAGACATTGATTTTCTGTTTAGCACAGAGCCTGGGGAGAATGAGAGTGGTATCAATATGAGTGCAGTTTTGGATAGTAATGAATGTGGAGACACAAATGGGACTGGTGGAAACATGGTGCATGGGGATAAGAAGCAGAAGGAGATACTATCATTTGCATCTTCTTCTCCATCATCTACAACAACTGCAGTTTCTTGTACCTATGCTTAG 1188 0.436 MKRSPASSCSSSSSSVGFEAPIAQQGKRRPSYSRRNLKSQKCKQSQTTGRRSSIYRGVTRHRWTGRFEAHLWDKSSWNNIQSKKGRQGAYDTEEAAARTYDLAALKYWGKDAVLNFPIGNYAKDIEEMDKVSKEEYLASLRRQSSGFSRGISKYRGVARHHHNGRWEARIGRVCGNKYLYLGTYKTQEEAAVAYDLAAIEYRGLNAVTNFDISNYIDKKKKDQTHQTETVPPNSSDSEEAEVEEQKTTPPPSENLHMPPLQHQVQHTPLVYHREESSSLVTIMDHVLEQDLPWSFMYTGVSQFQDPDFAFSKADDLVGMFDGSGFEEDIDFLFSTEPGENESGINMSAVLDSNECGDTNGTGGNMVHGDKKQKEILSFASSSPSSTTTAVSCTYA 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g02040 395 MobiDBLite consensus disorder prediction 219 258 - -
Phco9g02040 395 MobiDBLite consensus disorder prediction 1 20 - -
Phco9g02040 395 MobiDBLite consensus disorder prediction 37 51 - -
Phco9g02040 395 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 30 267 - -
Phco9g02040 395 Gene3D AP2/ERF domain 54 119 IPR036955 GO:0003700|GO:0006355
Phco9g02040 395 Gene3D AP2/ERF domain 152 213 IPR036955 GO:0003700|GO:0006355
Phco9g02040 395 FunFam AP2-like ethylene-responsive transcription factor 152 213 - -
Phco9g02040 395 CDD AP2 53 118 IPR001471 GO:0003700|GO:0006355
Phco9g02040 395 MobiDBLite consensus disorder prediction 1 51 - -
Phco9g02040 395 SMART rav1_2 54 123 IPR001471 GO:0003700|GO:0006355
Phco9g02040 395 SMART rav1_2 153 217 IPR001471 GO:0003700|GO:0006355
Phco9g02040 395 SUPERFAMILY DNA-binding domain 53 118 IPR016177 GO:0003677
Phco9g02040 395 ProSiteProfiles AP2/ERF domain profile. 153 211 IPR001471 GO:0003700|GO:0006355
Phco9g02040 395 PRINTS Ethylene responsive element binding protein signature 55 66 IPR001471 GO:0003700|GO:0006355
Phco9g02040 395 PRINTS Ethylene responsive element binding protein signature 193 213 IPR001471 GO:0003700|GO:0006355
Phco9g02040 395 FunFam AP2-like ethylene-responsive transcription factor 53 119 - -
Phco9g02040 395 Pfam AP2 domain 54 109 IPR001471 GO:0003700|GO:0006355
Phco9g02040 395 Pfam AP2 domain 152 203 IPR001471 GO:0003700|GO:0006355
Phco9g02040 395 CDD AP2 152 213 IPR001471 GO:0003700|GO:0006355
Phco9g02040 395 ProSiteProfiles AP2/ERF domain profile. 54 117 IPR001471 GO:0003700|GO:0006355
Phco9g02040 395 SUPERFAMILY DNA-binding domain 152 213 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g02040 Phco-Chr9 45392378 45397352 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Phco9g02040 AP2 7.3e-10 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g02040 9 45392378 45397352 Phco9g02040 9 45392378 45397352 ECH