Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g02023 ATGGCACCAAAACCAGTTTACCCTTCTCATTTACTCCTTTTAATCTTGTTTCTTGCCACCATCCCACTTTCAGAGCAGTTAGAGTTTTCTCAGTCTCAAACACTTCTCAAGGTTCAGCAACTTCTTGGCTATCCATCAGCATTAAGTACCCTCAGCAGCACCACAGACTTTTGCAATATTGAACCTACCCCATATTTGACACTAGTCTGCTATGAGGATAGCTTGACACAGCTGCATGTTGTTGGCAACATTGGGTATACTCCACTGCCTCCAAACTTCTCCTCAGATACTCTATTTGCTACACTAGGCACTCTATCAAGCTTGAAAGTCCTCTCTCTGGTTTCTCTTGGACTCTGGGGGCCCTTACCTGAAAGCATTGCACAGTTGTCTTCATTGGAAATACTTAACATTAGCTCAAACCACTTCAATGGAGCCATTCCATCTCAACTTTCACTTCTCAGGAACCTGCAGTCAGTGGTACTTGATGATAACAGCATCAGTGGTGAAATTCCTAACTGGGTAGGCTCACTTCAAGGTTTGGCTGTCCTTAGTATGAAGAAAAACTGGCTTAGTGGGAGCCTTCCAACTTCATTGGATGCTCTTCAGACCCTGAGGGTATTGGATCTATCAAGTAATCAGTTATCTGGGGAAGTTCCTCATCTCAAGAATTTAGCAAACCTTCAAGTTCTTAACTTGGAAAACAACACATTTGGACCTCATTTTCCTTCACTCCCCACCAAGTTAGTTTCTCTTGTGCTCAGAAATAACAGCTTCAGGCTAAGTGTCCCTTCTGGTTTAAGTTCTTTCTATCTGCTTCAAAGGCTGGACCTTTCATTGAATGGCTTTGTGGGGCCATTTCCATCATCCTTATTGTCACTTCCTTCCATAAATTATCTTGATATTTCCTCAAATAAATTCACTGGAATGCTTTTCAATAACATGTCATGCAATGATGATCTCCACTTTGTAAATTTGTCTTCAAATCTTCTGAAAGGGGAAATTCCCGCTTGTTTGGAACCAAAGACCAGGGTTGTTCTGTATGCTAGAAACTGCTTATCAACTAAGAACCAAGATCAGCACCCTTCAGATTTCTGCAGCAATGAGGCTTTGGCAGTGAAAATCATACCCCGTCAACCAAAGCACAAGAGAACAACTGGTAAAACAGTTATTGTATCAAGTATGGGAGGTGTTGTTGGTGTAGTATTGATTCTAGGAGTAGTTATCTTGGTTGTTAGCCGAGTTCATAAGAAACAAGTAGTGAAAATACCTTCACAGTCCCCTTCGGAAAATGTCACCAGCCAGTTACATAAAGAAGATGAAGTGAAAACTACTACAAGGTCCATAATGGAGCACATCATCAGAAGGGTTCCTGACAAACTTGCTGTGGAAGCACTGACAAGATCCATAAAGGAGCATGTAATGTGCCGAGTGAAAAATAAGCGTGTCGTGAGGGCATCGACAAGGTCCATAATAGAACATGTATCATCAGTTAACACAGCAAAACTACTCACAGATGCAAGGTATATATCACAAACAATGAAGATGGGAGCCAGCCTTCCTGCTTATAGGACCTTTGCTTTGGATGAACTTAAGGAAGCTACAAATAATTTTGATGCTTCATGTTTCATAAGTGAAGGCCCACATGGTCAGATCTATAAAGGGGTTCTCTCTGATGGGATGCAAATTGCTATTAGAGGTTTGAAAATGAGAAAGAGACATGGCCCTCAAACTTACATGCACCATGTTGAGATGATTTCAAAGCTAAGGCATTCACACTTGGTTAGTGCTCTTGGGCATGCTTTTGAGTGCAACCAGGATGATTCATGTGTGAACCGTGTATTTCTCATATTTGAGTTTGTTTCAAATAGAAGTTTAAGAACCTGCGTTTCTGGATCTTCTGGGGAAAAGATTTCTTGGATTCAGAGAATAGCAGCTACAATTGGAGTGGTGAAAGGCATTCAATTTTTGCACACAGGGATAGTACCTGGACTATATTCAAATAATCTCAAGATTACAGATATTTTTTTGGACAACAGTAACAATGTTAAAATAAGCAGCTACAATCTGCCACTTTCTGCTGCAAATAAAAGAGTGATCAGCAGTGGAACTTCCCCTGGACTAAAAGGAAATATCCAAGCAAGGATAAAGGGTGAAGACAAGAATGATGTCTATGATATTGGGGTAATCTTGCTAGAAATCATTCTGGGCCGACCAATAATGTTCCACAATGAAGTTGGAACACTAAAAGATCTTTTACATGTAAGCATCAAAACTGATGACATAGCTAGAAGAAGTATTGTTGACCCAGCAGTTCACAAGGAATGCTCAGATGAATCATTAATGACAATGATGGAGATATGTGTAAGGTGTCTCTCTGATGACCTAACTGAAAGGCCTTCTGTTGAAGATATTCTCTGGAACTTGCACTTTGCTGCACAAGTTCAGAATTCATGGAAAAGAGACTCAAGTGATCACAGTTACTCTCCTGCACCATCCTCCAGGGACATATAG 2511 0.407 MAPKPVYPSHLLLLILFLATIPLSEQLEFSQSQTLLKVQQLLGYPSALSTLSSTTDFCNIEPTPYLTLVCYEDSLTQLHVVGNIGYTPLPPNFSSDTLFATLGTLSSLKVLSLVSLGLWGPLPESIAQLSSLEILNISSNHFNGAIPSQLSLLRNLQSVVLDDNSISGEIPNWVGSLQGLAVLSMKKNWLSGSLPTSLDALQTLRVLDLSSNQLSGEVPHLKNLANLQVLNLENNTFGPHFPSLPTKLVSLVLRNNSFRLSVPSGLSSFYLLQRLDLSLNGFVGPFPSSLLSLPSINYLDISSNKFTGMLFNNMSCNDDLHFVNLSSNLLKGEIPACLEPKTRVVLYARNCLSTKNQDQHPSDFCSNEALAVKIIPRQPKHKRTTGKTVIVSSMGGVVGVVLILGVVILVVSRVHKKQVVKIPSQSPSENVTSQLHKEDEVKTTTRSIMEHIIRRVPDKLAVEALTRSIKEHVMCRVKNKRVVRASTRSIIEHVSSVNTAKLLTDARYISQTMKMGASLPAYRTFALDELKEATNNFDASCFISEGPHGQIYKGVLSDGMQIAIRGLKMRKRHGPQTYMHHVEMISKLRHSHLVSALGHAFECNQDDSCVNRVFLIFEFVSNRSLRTCVSGSSGEKISWIQRIAATIGVVKGIQFLHTGIVPGLYSNNLKITDIFLDNSNNVKISSYNLPLSAANKRVISSGTSPGLKGNIQARIKGEDKNDVYDIGVILLEIILGRPIMFHNEVGTLKDLLHVSIKTDDIARRSIVDPAVHKECSDESLMTMMEICVRCLSDDLTERPSVEDILWNLHFAAQVQNSWKRDSSDHSYSPAPSSRDI 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g02023 836 ProSiteProfiles Protein kinase domain profile. 537 810 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g02023 836 ProSiteProfiles Leucine-rich repeat profile. 203 225 IPR001611 GO:0005515
Phco9g02023 836 FunFam Probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 246 370 - -
Phco9g02023 836 Gene3D Ribonuclease Inhibitor 244 368 IPR032675 -
Phco9g02023 836 FunFam probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 151 244 - -
Phco9g02023 836 FunFam probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 30 150 - -
Phco9g02023 836 Gene3D Phosphorylase Kinase; domain 1 497 619 - -
Phco9g02023 836 Gene3D Ribonuclease Inhibitor 30 151 IPR032675 -
Phco9g02023 836 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 620 824 - -
Phco9g02023 836 Pfam Leucine rich repeat 154 214 IPR001611 GO:0005515
Phco9g02023 836 Gene3D Transferase(Phosphotransferase) domain 1 620 829 - -
Phco9g02023 836 SUPERFAMILY Protein kinase-like (PK-like) 517 810 IPR011009 -
Phco9g02023 836 Pfam Protein kinase domain 544 805 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g02023 836 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 511 619 - -
Phco9g02023 836 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 91 808 - -
Phco9g02023 836 SUPERFAMILY L domain-like 43 354 - -
Phco9g02023 836 Gene3D Ribonuclease Inhibitor 152 243 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g02023 Phco-Chr9 45186197 45191537 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Phco9g02023 Pkinase 1.8e-14 CL0016