Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g02021 ATGCGCAATTCAAAGTTTGCAGTGTCACTGCTCATAGCACGTGCCAAGTCCCTCCAACTTCACCATCACACGTGTCACTGCGTCGCTTCTTCTTCTCCTACCTCAACGTCCCTCTTCAGGTTTCTCCCTTCTTCCATACGAAACGCGAACTCCGTCGCCACCACGCGCTTCTTCTCCAGCTACTATTCTCTCGAACAGTTCTCCGATGATGAATACGAATGTGACTTTGAGAACCAGCAGGTATCGTCTACGGTGGCCAATGTGGACGAGTGGAAATGGAAACTCAGCATGCTGTTACGCAGCGAAAAGGACCAGGAGATTGTATCAAGAGATAGAAAAGATAGGAGGGACTATGAACAGATAGCTAACCTTGCCAAAAGAATGGGGCTATACAGTGAGTTGTTTGGAAAAGTGGTCGTTGCAAGCAAGGTGCCTCTTCCTAACTACCGTCCTGATTTGGATGACAAACGTCCACAAAGAGAGGTGGTGATTCCACTAAGCTTGCAAAGGAGGGTTGAGGGTTTGCTGCAGGAATACCTTGATAGACTTCAGTTGAATTCTGCAAAGGCAACTGGCAGCCTGGATGATGTGAACTCTGCCAATGAAGTCAAAGAAATAGACATTGATGAAAATACTGATTCTTTTGTGGATGAATCTGTTATGGAAAAGGTTCTCCAGAAGAGGAGTTTGAGGATGCGCAATATGCAAAGAGCTTGGCAGGAATCACCTGAAGGCAGGAAGATGCTGGAATTCCGGAAGTCTCTACCATCGTTCATGGAAAAGCAAGGTTTACTTCAAGCTATAGCACACAATCAGGTGATAGTTATATCTGGAGAGACTGGCTGTGGTAAAACCACTCAAATTCCTCAATATGTATTGGAATCACAGATAGAGTCTGGCCGTGGAGCATTTTGTAACATTATTTGCACGCAGCCTCGAAGGATATCTGCCATGGCAGTTTCTGAGAGAGTGTCAGCCGAGCGGGGAGAACCTCTTGGTGAAACAGTTGGCTTCAAAGTTCGATTGGAAGGAATGAAAGGGAAAAATACCCATCTGCTATTTTGTACCAGTGGTATATTACTTAGAAGGTTGCTGAGTGATCGAAATCTGAATGGTGTAACCCATATTTTTGTGGATGAAATTCATGAAAGAGGCATGAATGAAGACTTCTTATTGATTGTGCTAAAGGATCTGCTTCCACGGCGTCGGGATTTAAGGTTGGTTTTAATGAGTGCCACCTTGAATGCTGAGCTATTTTCAAATTATTATGGAGGTGCTCCCACATTTCGAATTCCGGGTTTCACCTATCCTGTTAGATCTCACTTTTTAGAAGATGTGTTGGAAATGACTGGATACAAGTTGACTTCCTTCAACCAAATTGATGATTATGGTCAAGAGAAACTGTGGAAAACACAAAAGCAATTAGCACCACGGAAGAGGAAAAATCAGATCAATTCTCTTGTTGAGGATGCTCTTTCGAAATCAAACTTTGAGAACTACAGCTCCAGGGCACGTGATTCAATGGCATCTTGGGCACCTGACTGCATAGGGTTTAATCTCATTGAGGCTGTTCTATGCCATATATGTCGGAAGGAACGACCAGGTTCTGTCTTGGTGTTTATGACGGGATGGGAGGATATAAGTTCTTTAAGAGATCAACTTAAAGCACATCCTCTTTTAGGAGATCCCAATAGGATTCTACTTCTAACGTGTCATGGTTCAATGGCAACGTCAGAGCAGAAACTCATATTTGAGAAACCACCTCCAAATATAAGGAAAGTAATACTTGCTACAAATATGGCTGAGGCAAGTATTACAATCAATGACATAGTTTTTGTGGTCGATTGTGGAAAAGCAAAAGAGACAACTTATGATGCTTTAAATAACACACCCTGTCTTCTACCTTCTTGGATATCACAAGCATCTGCTCGTCAGAGAAGAGGTAGGGCTGGTCGTGTGCAGCCAGGAGAATGCTACCACCTTTACCCCAAATGTGTTTATGAAGCCTTTTCTGAATATCAACTTCCTGAACTACTGAGAACACCTTTGAACTCTCTTTGCTTGCAAATAAAAAGTTTGCAGGTTGAGAGCATAGGAGAGTTCTTATCAGCAGCTTTACAGGCACCAGAGCCACGAACTGTTCAAAATGCTATTGATTTCCTCAAGTTGATTGGTGCACTAGATGAAAAAGAAAATCTTACAAATCTTGGGAGTTTTCTCTCTATACTTCCTGTAGATCCCAAGCTGGGCAAAATGTTAATAATGGGAGCTATATTTCGATGCTTTGATCCTGTTCTTACAGTTGTAGCTGGCCTTAGTGTCAGGGATCCGTTTCTTTTGCCCCAAGACAAGAGGGATTTAGCAGGGACAGCAAAGTCTAGGTTTTCTGCCAAAGATTACAGTGATCATATGGCTCTTGTTCGAGCATATGAAGGATGGAAAGATGCAGAAAGAGAAGGATCATCTTATGAATACTGCTGGAGAAATTTTCTCTCTGCCCAAACTCTTCAGGCTATTCATTCACTTCGGAAGCAGTTTAGCTTCATCTTGAAAGATGCTGGCTTGGTAGATGCTGATGCAAGCATGATTAACAAATTGAGTCACAATCAGTCTCTTGTGCGTGCAGTCATTTGTTCTGGACTCTTTCCTGGCATAGCATCAGTGGTGCACAGGGAGACATCCATGTCATTTAAAACAATGGATGATGGCCAGGTTTTATTATATGCTAATTCAGTGAATGCACGTTACCAGACCATTCCATACCCATGGTTGGTTTTTGGTGAGAAAGTTAAGGTCAATGCTGTTTTCATCCGTGATTCCACTGCTGTATCTGATTCAATACTTATCCTGTTTGGTGGTGCTCTAAGTAATGGGGTACAGGCTGGGCATCTGAAAATGTTAGATGGTTATGTTGACTTCTTCATGGATCCTAATTTAGCTGACTGCTATTTGAAGCTTAAGGAAGAGCTCGATAAGCTTATCCAGAAGAAGCTTGAAGATCCTAGCATTGACATTCACAAGGAAGGGAAGTACTTGGTGCTTGCTGTTCAGGAGCTGGTTTCAGGGGATCAATGTGAAGGAAGATTTGTGTTTGGTCGTGAAAGCCGGAAGCCTAGGGCCTCTAATGATGAAAATAAATTCACAAAAGATGGGACAAATCCCAAGAGCTTGCTGCAAACACTGTTGATGCGAGCAGGACACTCCCCTCCAAAATACAAAACCAAACATCTAAAGACGAATGAGTTTAGGGCACTGGTGGAGTTTAAGGGAATGCAATTTGTTGGCAAACCGAAGAAAAACAAGCAACTTGCAGAAAGGGATGCTGCTATAGAGGCATTGGCTTGGTTGACTCACACTTCTGACAATTATCAGCATGAAGATGATAAATCTCCTCCCGATGTCACTGATAACATGCTAAAACTCCTAGGGAAGCGTAGAAAATCAAAGCGACGCCATGATTGA 3462 0.4278 MRNSKFAVSLLIARAKSLQLHHHTCHCVASSSPTSTSLFRFLPSSIRNANSVATTRFFSSYYSLEQFSDDEYECDFENQQVSSTVANVDEWKWKLSMLLRSEKDQEIVSRDRKDRRDYEQIANLAKRMGLYSELFGKVVVASKVPLPNYRPDLDDKRPQREVVIPLSLQRRVEGLLQEYLDRLQLNSAKATGSLDDVNSANEVKEIDIDENTDSFVDESVMEKVLQKRSLRMRNMQRAWQESPEGRKMLEFRKSLPSFMEKQGLLQAIAHNQVIVISGETGCGKTTQIPQYVLESQIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGETVGFKVRLEGMKGKNTHLLFCTSGILLRRLLSDRNLNGVTHIFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLVLMSATLNAELFSNYYGGAPTFRIPGFTYPVRSHFLEDVLEMTGYKLTSFNQIDDYGQEKLWKTQKQLAPRKRKNQINSLVEDALSKSNFENYSSRARDSMASWAPDCIGFNLIEAVLCHICRKERPGSVLVFMTGWEDISSLRDQLKAHPLLGDPNRILLLTCHGSMATSEQKLIFEKPPPNIRKVILATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQPGECYHLYPKCVYEAFSEYQLPELLRTPLNSLCLQIKSLQVESIGEFLSAALQAPEPRTVQNAIDFLKLIGALDEKENLTNLGSFLSILPVDPKLGKMLIMGAIFRCFDPVLTVVAGLSVRDPFLLPQDKRDLAGTAKSRFSAKDYSDHMALVRAYEGWKDAEREGSSYEYCWRNFLSAQTLQAIHSLRKQFSFILKDAGLVDADASMINKLSHNQSLVRAVICSGLFPGIASVVHRETSMSFKTMDDGQVLLYANSVNARYQTIPYPWLVFGEKVKVNAVFIRDSTAVSDSILILFGGALSNGVQAGHLKMLDGYVDFFMDPNLADCYLKLKEELDKLIQKKLEDPSIDIHKEGKYLVLAVQELVSGDQCEGRFVFGRESRKPRASNDENKFTKDGTNPKSLLQTLLMRAGHSPPKYKTKHLKTNEFRALVEFKGMQFVGKPKKNKQLAERDAAIEALAWLTHTSDNYQHEDDKSPPDVTDNMLKLLGKRRKSKRRHD 1153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g02021 1153 FunFam DExH-box ATP-dependent RNA helicase DExH3 516 672 - -
Phco9g02021 1153 Pfam DEAD/DEAH box helicase 265 416 IPR011545 GO:0003676|GO:0005524
Phco9g02021 1153 CDD DEXHc_RHA-like 271 431 - -
Phco9g02021 1153 Pfam Helicase associated domain (HA2) 717 803 IPR007502 GO:0004386
Phco9g02021 1153 Pfam Helicase conserved C-terminal domain 523 653 IPR001650 -
Phco9g02021 1153 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 520 694 IPR001650 -
Phco9g02021 1153 MobiDBLite consensus disorder prediction 1121 1142 - -
Phco9g02021 1153 MobiDBLite consensus disorder prediction 1034 1053 - -
Phco9g02021 1153 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 264 827 IPR027417 -
Phco9g02021 1153 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 265 432 IPR014001 -
Phco9g02021 1153 PANTHER ATP-DEPENDENT RNA HELICASE 210 975 - -
Phco9g02021 1153 SMART ha2_5 716 807 IPR007502 GO:0004386
Phco9g02021 1153 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 873 954 IPR011709 -
Phco9g02021 1153 SUPERFAMILY dsRNA-binding domain-like 1047 1129 - -
Phco9g02021 1153 SMART DRBM_3 1054 1117 IPR014720 -
Phco9g02021 1153 Gene3D - 1033 1121 - -
Phco9g02021 1153 MobiDBLite consensus disorder prediction 1121 1153 - -
Phco9g02021 1153 Gene3D - 696 798 - -
Phco9g02021 1153 SMART ultradead3 253 446 IPR014001 -
Phco9g02021 1153 Pfam Double-stranded RNA binding motif 1054 1116 IPR014720 -
Phco9g02021 1153 FunFam DExH-box ATP-dependent RNA helicase DExH3 208 433 - -
Phco9g02021 1153 Gene3D - 204 433 IPR027417 -
Phco9g02021 1153 CDD SF2_C_RHA 508 662 - -
Phco9g02021 1153 Gene3D - 518 673 IPR027417 -
Phco9g02021 1153 SMART helicmild6 548 654 IPR001650 -
Phco9g02021 1153 FunFam Putative ATP-dependent RNA helicase DHX36 696 801 - -
Phco9g02021 1153 FunFam DEA(D/H)-box RNA helicase family protein 1035 1121 - -
Phco9g02021 1153 MobiDBLite consensus disorder prediction 1034 1050 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g02021 Phco-Chr9 45156117 45172732 Dispersed/Transposed