Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g02015 ATGGCCGCATCTAGCTGTGACCCTTTGCTGCAGGGAGATTTTCCGGAGTATTTGGCACATGGGCATGCCAAATGCATTGCCTTCAATCGTCGTGGTATACTTCTTGCTGTTGGGTGCAAAGATGGAAGGTGCGTTATCTGGGATTTTGAAACCCGTTGCATTGCTAAAGAGCTAAAAGATGAAGAATGTTCATATCCAATAAACAGTGTCTGTTGGTCGAGGTCTGGTAATAATCTTCTTCTGTCTTCTGCTGACCAGTCATTGACACTGTGGGATGTGAAGAGTGGTAATAGGATAACAAGAATAGTTTTACCGAAAAGCCCTCTACAAGCTCGTCTTCATCCACGTTCCTCTAAACCACCACTTTGCTTGGCATGCCCTCTCTCACGTCCTCCCCTGATTGTTGACTTGAACACAGAAATAACAACTTCGCTTAATCTTTGTGTCTCACATACCAGGTGCCCATGTGGTGATAGAACTACTTTCTGTTCACCAACTCCTGCGTGTTTTAACAAGTATGGAAACCTGGTTTATGTGGGAAGCTCAAAGGGGGAAATTCTTTTAATTAACTATATAGAAAATGAGGTGCATGCCATGATTCTTATCCCTGCTGATTGTGAAGTGAAGAACGTTGTGCTCAGCAGAAATGGACTGTACCTTCTAGCAAACTCAAGTGATCGAATAATCCGGATCTATGAAAATCTTCTACCTCTGAAAGATGAAGTTAGAGCACTTGATGATCTGAAAGAGAACTTCAAAGGCCTAAAGGGTACTGATAAGTTGCAGGCTGTAGGATCAAAGTGCTTGACTTTGATCCGGGAGATACAAGATTTAACCATGATTTCTCACTGGAAATCGCCCTGCTTCAGTGACAATGGGGAGTGGGTTGTTGCTGGTTCTGCTAGTAAAGGAGGGCACAAGATTTACATATGGGATAAAGCTAGACTGGTGAAAATCCTTGAAGGGCCTAAGGAAAGCATTGCTGATTTAGCATGGCATCCTGCACGTCCTATTGTTGCATCCGTTTGTTCGACTGGCAAAGTTTATATCTGGGCCAAAGATGTCTCAGAGAACTGGAGTGCTTTTGTTCCTAATGTCGAAGTGATTGAGGAAAACGAGGAGTATGTAGAGCGAGAAGATGAATTTGATTTGAAATCTCCTGAGACTGAGAAGGAGGTGAAAGGATCTGAAGATGATGAAATTGAAGAAGGTGAAATTTTACCGGAGGAGAAAGGTCTTGCTTTCAGTGATTCTGACATGTCTCAAGAAGAGTTATGTTTCCTGCCAGCAAATCCCACCTATGATGTTCCTGAACAGACAGACAAGTCAATAGAAAGTTCTTCTAAGTTGGTGGACAGCAATAACTCAAGTCCACCTGGAGGTAATGTCAACCATTGA 1398 0.4292 MAASSCDPLLQGDFPEYLAHGHAKCIAFNRRGILLAVGCKDGRCVIWDFETRCIAKELKDEECSYPINSVCWSRSGNNLLLSSADQSLTLWDVKSGNRITRIVLPKSPLQARLHPRSSKPPLCLACPLSRPPLIVDLNTEITTSLNLCVSHTRCPCGDRTTFCSPTPACFNKYGNLVYVGSSKGEILLINYIENEVHAMILIPADCEVKNVVLSRNGLYLLANSSDRIIRIYENLLPLKDEVRALDDLKENFKGLKGTDKLQAVGSKCLTLIREIQDLTMISHWKSPCFSDNGEWVVAGSASKGGHKIYIWDKARLVKILEGPKESIADLAWHPARPIVASVCSTGKVYIWAKDVSENWSAFVPNVEVIEENEEYVEREDEFDLKSPETEKEVKGSEDDEIEEGEILPEEKGLAFSDSDMSQEELCFLPANPTYDVPEQTDKSIESSSKLVDSNNSSPPGGNVNH 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g02015 465 MobiDBLite consensus disorder prediction 436 465 - -
Phco9g02015 465 Gene3D - 15 126 IPR015943 GO:0005515
Phco9g02015 465 ProSitePatterns Trp-Asp (WD) repeats signature. 79 93 IPR019775 -
Phco9g02015 465 ProSiteProfiles Trp-Asp (WD) repeats profile. 67 101 IPR001680 GO:0005515
Phco9g02015 465 MobiDBLite consensus disorder prediction 378 465 - -
Phco9g02015 465 MobiDBLite consensus disorder prediction 379 394 - -
Phco9g02015 465 SMART WD40_4 265 312 IPR001680 GO:0005515
Phco9g02015 465 SMART WD40_4 51 92 IPR001680 GO:0005515
Phco9g02015 465 SMART WD40_4 12 48 IPR001680 GO:0005515
Phco9g02015 465 SMART WD40_4 313 352 IPR001680 GO:0005515
Phco9g02015 465 SMART WD40_4 194 233 IPR001680 GO:0005515
Phco9g02015 465 Gene3D - 134 401 IPR015943 GO:0005515
Phco9g02015 465 Pfam WD domain, G-beta repeat 66 92 IPR001680 GO:0005515
Phco9g02015 465 Pfam WD domain, G-beta repeat 20 48 IPR001680 GO:0005515
Phco9g02015 465 Pfam WD domain, G-beta repeat 288 312 IPR001680 GO:0005515
Phco9g02015 465 PANTHER RETINOBLASTOMA-BINDING PROTEIN 5 7 457 IPR037850 GO:0048188
Phco9g02015 465 SUPERFAMILY WD40 repeat-like 23 351 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g02015 Phco-Chr9 45109655 45112084 Dispersed