Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01953 ATGATTTTTCCAAAACAAGACTTGATTACTGGAAAAATGTTCTGCAACATCTTAAAAAGTTTTAACAATTGGAAGAGGAAGTGGGCAAAATTGAAGATAAGAATCAGTGACAGAGAGATAAAGAACGAGAACATATTTATCTACTGCCAAAGGCCTGAAGTTGAACCAATGGATTGTTCAGCTGCAAGAAAGACTCAAAAGGCTGACCGAGAAAAGTTAAGGAGGGATCGACTCAATGAACAGTTTGTAGAACTGGGTAACGTTTTAGACCCTGACAGGCCCAAAAATGACAAAGCAACCATTCTAGGTGATACAATTCAATTGCTGAAGGACCTTACTTCTCAAGTTAGTAAACTCAAAGAAGAATATGCTACACTAAATGAAGAATCTCGTGAGCTGACTCAGGAGAAAAATGATCTCAGAGAAGAAAAGGCTTCTCTTAAATCGGATATCGATAACTTGAATAATCAGTATCAGCAGCAGCTCAGGACTATGTTTCCATGGACTGCAATGGATCATTCAGTTGTGATGGCTCCCCCATCATACCCCTTTCCAATGCCAATGGCAGTACCTCCTGGTCCAATTCCCATGCAGCCATTCCCCTACTTTGCTAATCAACATCCTGCAGTCATCTCCAATCCCCATTCAACTTTTGTTCCTTATTTAGCCCCCAATACCATTGTTGAACAACAATCAACACAGTACGTTTCGCCTCCACTTCATCCAGGCAGTCGGTCCAATGTGTCTGAAAAACAAGAGTCCAAAAGCAAATCATTCAGGGAGAGCAAGGCCGAAAAGAATGAGGATTCTAATGATGTCACTACGGACCTTCAGTTGAAGACTCCTGGGTCTTCTGGAGATCAGGATTTATCATCCGGACAAAGAAAATCTGGGAAGTTGTCAAGAAGGGAAAGCAGCTGCTGCTCGGGAGGGAATTCATTAGGTAGGTCTTCTTCTCATAGCGCTCAGGATAGCTCATCAAGCAGTACAGTTGCAAGCAGAAAGGATAATGAATGA 1017 0.4189 MIFPKQDLITGKMFCNILKSFNNWKRKWAKLKIRISDREIKNENIFIYCQRPEVEPMDCSAARKTQKADREKLRRDRLNEQFVELGNVLDPDRPKNDKATILGDTIQLLKDLTSQVSKLKEEYATLNEESRELTQEKNDLREEKASLKSDIDNLNNQYQQQLRTMFPWTAMDHSVVMAPPSYPFPMPMAVPPGPIPMQPFPYFANQHPAVISNPHSTFVPYLAPNTIVEQQSTQYVSPPLHPGSRSNVSEKQESKSKSFRESKAEKNEDSNDVTTDLQLKTPGSSGDQDLSSGQRKSGKLSRRESSCCSGGNSLGRSSSHSAQDSSSSSTVASRKDNE 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01953 338 MobiDBLite consensus disorder prediction 274 295 - -
Phco9g01953 338 Gene3D - 61 145 IPR036638 GO:0046983
Phco9g01953 338 Coils Coil 61 81 - -
Phco9g01953 338 MobiDBLite consensus disorder prediction 248 273 - -
Phco9g01953 338 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 62 112 IPR011598 GO:0046983
Phco9g01953 338 Pfam Helix-loop-helix DNA-binding domain 63 112 IPR011598 GO:0046983
Phco9g01953 338 MobiDBLite consensus disorder prediction 233 247 - -
Phco9g01953 338 MobiDBLite consensus disorder prediction 233 338 - -
Phco9g01953 338 CDD bHLH_AtILR3_like 67 141 - -
Phco9g01953 338 MobiDBLite consensus disorder prediction 303 338 - -
Phco9g01953 338 PANTHER TRANSCRIPTION FACTOR BHLH121 49 335 IPR044579 GO:0003700|GO:0006879
Phco9g01953 338 SMART finulus 68 118 IPR011598 GO:0046983
Phco9g01953 338 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 61 132 IPR036638 GO:0046983
Phco9g01953 338 Coils Coil 102 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01953 Phco-Chr9 44380183 44384069 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco9g01953 HLH 1.4e-08 No_clan