Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco9g01936 | ATGACTTTCTCATTTTTCACCGCTTTTCGAGCCTCCAATTGTCGTACTCTTACTCAGGTACGACAACTCTCTGACAAAGGGTTAATCATAACAACACCTGATTCTTGGTTTGTCAAGATACTTTCTACCCTCTTTCTATGCTCTAGCACTTCTGATGATGATTTTTTGGATTATCTCCGTAAGCACTTAACTCCTTCTCATGTCTCAGAGGTTGTTAGAAGGCTTAACAACCCGAACTTGGGTTTCAAGTTCTATCTGTTTACAAGAGAAAGGTTGAGTATGTCTCATTCATTTTGGACTTATAATATACTTTTGAGGTCCCTTTGTCAAGCAAATCTCCACAGTTCAGCAAAATTGTTATATGATTTCATGAGGTCTGATGGGCAATTGCCTGATTCTGGGCTTTTGGGATTTTTGGTTTCTTCTTTTGCACTGGCTGGCAGGTTTGATGTTTCAAAGGAATTACTTGCTGAAGCTCAGTGCAATGGGATTCAAGTAAAGGTGATTGTTTATAACAACTTTTTGAACATATTGATTAAACACAATAAGTTAGATGATGCCATTTGTTTATTTAGGGAGCTTATGAGAACACATTCTTGTCTAGAGACCTTCACCTTCAACATTTTAATGCGGGGTTTATGCACAGCTGGAGAAGTTGATGAAGCTTTTAGGCTTCTCAGTGGTATGAGAAGTTTTGGTTGTTTCCCCGATATAGTTACATATAACACTCTATTACATGGCTTATGTAGAATAGATCTAGTTGATAGAGCATTCGGTCTACTGAAAGAAGTTTGTCTAAAATGTAAGTTTGCCCCTAATGTTGTTAGCTATACAACAGTCATATCGGGTTATTGCAGATTGAGTAAGATGAAAGAGGCCTCCTCTCTTTTTGATGAAATGATTAGATCCGGAATCAAGCCTAATGTCTTTACCTTTACTACTCTCATTGACGGCTTTGTTAAGGCAAGTGACATGGTTTCTGCACTAGGTATGCACAAGAAGATGCTTTTACATGGCTGTCCTCCCAATGTTGTTACTTTAACTTCCTTAATTAATGGCTATTGCCGAATTGGATGGGTGAATCATGGCTTGGACTTATTGCATGAAATGAAAGCACGTCATGTTCCGGCAAATTTGTATACTTTCTCGGTTCTTATCAGTGCTTTGTGCAAGAGCAATAGACTGCAAGAAGCACATAATCTTTTGAGACTATTGAAGCAGAGTGACATTGTTCCACAGTCTTTTGTCTACAATCCTGTCATTGATGGATATTGCAAATCTGGGAACATTGATGAGGCTAATGCAATTGTGGCAGAAATGGAAGAGAAAGGCAAGCCTGATAAGTTGACATTTACCATTCTTATTATTGGGCATTGTATGAAAGGAAGAACACCTGAAGCAATTGGTATCTTCTACAAGATGCTGGAAGCTGGTTGTACTCCAGATGACATCACAATTAGAACGTTAAGTTCCTGTCTCTTGAAGGCTGGGATGCCTAGTGAGGCTTCCCGCATTAAGGAAACTATATTTGAGAAGCAGAGTACATTACTGAAAAAATCTTATCATGAAAGTTTAAATCCAGATAATTCAATTCCTTTTCATTAA | 1605 | 0.3813 | MTFSFFTAFRASNCRTLTQVRQLSDKGLIITTPDSWFVKILSTLFLCSSTSDDDFLDYLRKHLTPSHVSEVVRRLNNPNLGFKFYLFTRERLSMSHSFWTYNILLRSLCQANLHSSAKLLYDFMRSDGQLPDSGLLGFLVSSFALAGRFDVSKELLAEAQCNGIQVKVIVYNNFLNILIKHNKLDDAICLFRELMRTHSCLETFTFNILMRGLCTAGEVDEAFRLLSGMRSFGCFPDIVTYNTLLHGLCRIDLVDRAFGLLKEVCLKCKFAPNVVSYTTVISGYCRLSKMKEASSLFDEMIRSGIKPNVFTFTTLIDGFVKASDMVSALGMHKKMLLHGCPPNVVTLTSLINGYCRIGWVNHGLDLLHEMKARHVPANLYTFSVLISALCKSNRLQEAHNLLRLLKQSDIVPQSFVYNPVIDGYCKSGNIDEANAIVAEMEEKGKPDKLTFTILIIGHCMKGRTPEAIGIFYKMLEAGCTPDDITIRTLSSCLLKAGMPSEASRIKETIFEKQSTLLKKSYHESLNPDNSIPFH | 534 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco9g01936 | 534 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 97 | 131 | IPR002885 | - | |
| Phco9g01936 | 534 | PANTHER | TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED | 254 | 508 | - | - | |
| Phco9g01936 | 534 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 202 | 236 | IPR002885 | - | |
| Phco9g01936 | 534 | Pfam | PPR repeat | 100 | 128 | IPR002885 | - | |
| Phco9g01936 | 534 | Pfam | PPR repeat | 170 | 195 | IPR002885 | - | |
| Phco9g01936 | 534 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 237 | 272 | IPR002885 | - | |
| Phco9g01936 | 534 | Gene3D | Tetratricopeptide repeat domain | 159 | 266 | IPR011990 | GO:0005515 | |
| Phco9g01936 | 534 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 378 | 412 | IPR002885 | - | |
| Phco9g01936 | 534 | Pfam | PPR repeat family | 203 | 250 | IPR002885 | - | |
| Phco9g01936 | 534 | Pfam | PPR repeat family | 272 | 321 | IPR002885 | - | |
| Phco9g01936 | 534 | Pfam | PPR repeat family | 412 | 459 | IPR002885 | - | |
| Phco9g01936 | 534 | Pfam | PPR repeat family | 342 | 391 | IPR002885 | - | |
| Phco9g01936 | 534 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 413 | 447 | IPR002885 | - | |
| Phco9g01936 | 534 | Gene3D | Tetratricopeptide repeat domain | 267 | 335 | IPR011990 | GO:0005515 | |
| Phco9g01936 | 534 | Gene3D | Tetratricopeptide repeat domain | 53 | 158 | IPR011990 | GO:0005515 | |
| Phco9g01936 | 534 | Gene3D | Tetratricopeptide repeat domain | 336 | 403 | IPR011990 | GO:0005515 | |
| Phco9g01936 | 534 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 343 | 377 | IPR002885 | - | |
| Phco9g01936 | 534 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 273 | 307 | IPR002885 | - | |
| Phco9g01936 | 534 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 308 | 342 | IPR002885 | - | |
| Phco9g01936 | 534 | Gene3D | Tetratricopeptide repeat domain | 404 | 520 | IPR011990 | GO:0005515 | |
| Phco9g01936 | 534 | NCBIfam | pentatricopeptide repeat | 100 | 132 | IPR002885 | - | |
| Phco9g01936 | 534 | NCBIfam | pentatricopeptide repeat | 450 | 482 | IPR002885 | - | |
| Phco9g01936 | 534 | NCBIfam | pentatricopeptide repeat | 310 | 344 | IPR002885 | - | |
| Phco9g01936 | 534 | NCBIfam | pentatricopeptide repeat | 239 | 274 | IPR002885 | - | |
| Phco9g01936 | 534 | NCBIfam | pentatricopeptide repeat | 380 | 412 | IPR002885 | - | |
| Phco9g01936 | 534 | NCBIfam | pentatricopeptide repeat | 345 | 378 | IPR002885 | - | |
| Phco9g01936 | 534 | NCBIfam | pentatricopeptide repeat | 275 | 309 | IPR002885 | - | |
| Phco9g01936 | 534 | NCBIfam | pentatricopeptide repeat | 416 | 444 | IPR002885 | - | |
| Phco9g01936 | 534 | NCBIfam | pentatricopeptide repeat | 204 | 238 | IPR002885 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phco9g01936 | Phco-Chr9 | 44238495 | 44240099 | Dispersed/Proximal |