Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01929 ATGGAAGACAGAGAGAAGAACACTTGCATTGCCGAGCTAATTGATTGCAATGAGAAGGAAAAAAACAAGAAGAAGAAGGTGAAGCAAGTCACACAGAGAGTTGCTCTGAAAGCATCAGCACCAAATCCTGCAACTGCAAACAATGGTGGTGATGTTAGTGTTAGGATTGCTCTGTTCGATTTTTCAGTTGAAAATTTCTTCCGAGACATGGACACCATTGTCAGACTCTGTGGGAAAGAAGAAAACGGTGTTGCTATTGACCAGAGCGAGATTCAAAGAATGTCTTCCTCAGTCACTTTCTTAAGAGAATGGAGAGATTTCAAATATCCATCAAAAAACATTAAATTTGCATATGGAATGGAGAACTCTAATTGTTTTGAGGGAAAAGATGTCAGTGCCATAAATTTGCCCCCATTTTCTTCTGCTTCTGTTCCTGAGCAAGATATACAAAAGGAGCAACTTGGGGAGGTCATATCTCAAGAACGCAGAGATTTTGTGATGAATGTTGGAGGCTCTGTATGGGCATTAGACTGGTGTCCTCAAATACATGAAAAACCTGATTCTTCAGTTAAATGTGAGTTTATTGCTGTTGCTGCTCATCCACCGGGCTCTTCTTATCACAAAATGGGTGCCCCACTTACTGGCAGAGGTGTCATACAAATATGGTGTCTTCTAAATATCTGGGAACACAATGACAATTCAACAAAAAAACAGAAGCCTAAAGGAAGACCTCGAAAAAATCCAACTGTGGTGAATGATATCACTTGTGATAAAACAGATGGAGACACAACTGACAAATCAACCCAAATAAAGAAGCCTCTAGGAAGACCTAGAAAAAATCCAATAGTGGTAGCAGTGGATGATATGAATTGTGATAAAAAAGATGGAGGAGTAAATGATAAATCGACCCTAATAAAGAGGCCTAGAGGAAGACCTAGAAAGAATCCAACAGTGACAGCAGTGGATGATGCAAATTGTGAGATCAAGGATATGCCAGCTCTTGCTGTTCAATTTCCAGAAAATTCTACTGAGTTTCCTACTCCAAATGGGAATCATGAAAAAAATGAAGAAATACTTCCTAAATGTGATGGAGGCACAAATGACAAATTGACACAAATAAATAGGCTTAGAGGAAGACCAGGAAAAAATTCCATAGTAATTGCAGTGGATGATATGAACTGTGAGACCCAGAACAAGTCAGCTTGTGATGTTCAAGCTGCACAAAATTCTACTGAGTTTCTTGCTTCAGACGGGAATCTTGAAAACAATGAAAAACTTGTAACGTACAGAAGAAAAAACAGAGCTAAAGAAAATGTAGAGACAGATGAAAAGTCAGCACTAATAAAGAGTCTTAGAAGAAGACCAAAATCAAATTCAAAAGGAGTAACAGCAGATGATCCAAATTGTGACAATAAATCTATGCCTCTTGATATTCAAAACGCAGAAGATTTAACTGAATATTTTTCTTCAGATATGACTCTTGACGATTGCAATGAAAAATCAGTACATAGGCCTAGAAGAAGACATGAATCAAATTCAGCAATGACAAATAATCCAAATTGTGAGAATGAATCCATGCCTCTTGATATTCAAGTCCCAGAGGATTCAGCTGATTTTCTTTCTCTAGATGTGGCTCATGACAATTGCAATAAACATTCTTTGCAACAATGTTCTGTTACAAAGCAAATACATACAAAGGAGGCTGTTTCTGCCTGCAATACTTTTTCAACAACTGTTGTTAAAAACAGTGGATTGAAAATTAATCATAGAGAAGGGAGATATGACCAAGATATAAGTCAGCCACTACAGTATGATAATGAGGCAAATTATCAACTATGTTCTACCTCTGAGTTGGAAGCTTGTTCTGTTCCAGAAGATGTAACTTTGCCTAGAGTAGTTTCATGCCTAGCTCATAATGGAAAAGTGGCATGGGATGTGAAATGGAGACCTACTAACATTTCTGACTCTTCTTACAAACATCGAATGGGCTATCTTGCTGTCTTGTTGGGCAATGGATCTTTGGAAGTGTGGGAGGTTCCTCTTCCTCATGTATTGAGAGCAATTTATATGCACAGAGAGGGGACTGATCCACGTTTTATAAAATTGGAGCCTGTATTTAAATGCTCAATATTGAAGCGTCGTGGCATACAAAGCATTCCACTGACAGTGGAGTGGTCAGTTACACCCCCGCATGACTATTTACTTGCTGGCTGCCATGATGGAACGGTTGCTTTGTGGAAGTTTTGTATAAATTCTTCATCCAAATGTAATGATACAATGCCTGTGCTTTGTTTTGGTGGGGATACAGTTCCTATTAGAACAGTTGCCTGGGCTCCGTTCGAAGGGGATCCGGAGAGTTCTAATATAATAGTAACTGCGGGACATGAAGGCCTTAAGTTTTGGGACCTACGTAATCCATTTCGTCCTTTGAGGAACCTCCATCCTGCGCCAAGAATCATATATAGTTTGGATTGGCTGTCAAAGCCAAGTTGCATCATTATGTCCTTTGAAGATGGAACAATGAAAACCATTGGCTTGGCGAAGGCTGCAAATGACCTTCCTGTCACTGGAGAAATATACAGTGGAAAAAAGCAACCTGGGTTGCACGGTTCTTTATATGCATCGTTTGCCATTTGGAGTGTTCAAGTGTCACGTATAACAGGCATGCTTGCTTATTGTGGTGCAGACGGTACTGTCTTCCGTTTTCAGCTTACTACTAAATCAGTGGAGGCAGATCATGCACGCAATCCAGCCCCACGCTTCCTTTGTGGGTCAGTAACCGAGGAGAATTCAAATCTAGTCATCAACACTCCTGTATCAAATGCTCCTGTTCCGTGGAAGAAGCCACCTGTCAAGGGTCGGTGTGCTGAATCTTTCCGAGACCTGGTATCCAAGACAAATCCATACAAAAATGCTCTTAATCAAGTGCCAGAAACTTCCATTCTTGATTTTGATTCTCAGACTTTAGCCATTGGTGGTGGTGAGAATGTGGATTTGTTGGAATCTGGGTCGGAGGAAGCTTTATATTCTATGAAGCAGCCCAGAAGTCCAAAACTTAACAAGGGCAGCAAGAAAAAACCAGAAGATGATAATGAAAAGTCGGATTTCGGGAATATACCTGAAACCTTTCCTCCCAAAATGGCTGCGTTGCACAAAGTGAGATGGAACATGAACAAAGGTAGTGAAAGATGGTTGTGCTTTGGAGGAGCTTGTGGACTCGTACGTTGTCAGGAGATTGTTTACTCTGATATTGATAAGAAATTGGCCTTGAAAAAATGA 3279 0.4004 MEDREKNTCIAELIDCNEKEKNKKKKVKQVTQRVALKASAPNPATANNGGDVSVRIALFDFSVENFFRDMDTIVRLCGKEENGVAIDQSEIQRMSSSVTFLREWRDFKYPSKNIKFAYGMENSNCFEGKDVSAINLPPFSSASVPEQDIQKEQLGEVISQERRDFVMNVGGSVWALDWCPQIHEKPDSSVKCEFIAVAAHPPGSSYHKMGAPLTGRGVIQIWCLLNIWEHNDNSTKKQKPKGRPRKNPTVVNDITCDKTDGDTTDKSTQIKKPLGRPRKNPIVVAVDDMNCDKKDGGVNDKSTLIKRPRGRPRKNPTVTAVDDANCEIKDMPALAVQFPENSTEFPTPNGNHEKNEEILPKCDGGTNDKLTQINRLRGRPGKNSIVIAVDDMNCETQNKSACDVQAAQNSTEFLASDGNLENNEKLVTYRRKNRAKENVETDEKSALIKSLRRRPKSNSKGVTADDPNCDNKSMPLDIQNAEDLTEYFSSDMTLDDCNEKSVHRPRRRHESNSAMTNNPNCENESMPLDIQVPEDSADFLSLDVAHDNCNKHSLQQCSVTKQIHTKEAVSACNTFSTTVVKNSGLKINHREGRYDQDISQPLQYDNEANYQLCSTSELEACSVPEDVTLPRVVSCLAHNGKVAWDVKWRPTNISDSSYKHRMGYLAVLLGNGSLEVWEVPLPHVLRAIYMHREGTDPRFIKLEPVFKCSILKRRGIQSIPLTVEWSVTPPHDYLLAGCHDGTVALWKFCINSSSKCNDTMPVLCFGGDTVPIRTVAWAPFEGDPESSNIIVTAGHEGLKFWDLRNPFRPLRNLHPAPRIIYSLDWLSKPSCIIMSFEDGTMKTIGLAKAANDLPVTGEIYSGKKQPGLHGSLYASFAIWSVQVSRITGMLAYCGADGTVFRFQLTTKSVEADHARNPAPRFLCGSVTEENSNLVINTPVSNAPVPWKKPPVKGRCAESFRDLVSKTNPYKNALNQVPETSILDFDSQTLAIGGGENVDLLESGSEEALYSMKQPRSPKLNKGSKKKPEDDNEKSDFGNIPETFPPKMAALHKVRWNMNKGSERWLCFGGACGLVRCQEIVYSDIDKKLALKK 1092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01929 1092 MobiDBLite consensus disorder prediction 290 306 - -
Phco9g01929 1092 MobiDBLite consensus disorder prediction 344 366 - -
Phco9g01929 1092 Gene3D - 497 939 IPR015943 GO:0005515
Phco9g01929 1092 PRINTS AT-hook-like domain signature 238 248 IPR017956 GO:0003677
Phco9g01929 1092 PRINTS AT-hook-like domain signature 304 314 IPR017956 GO:0003677
Phco9g01929 1092 PRINTS AT-hook-like domain signature 269 280 IPR017956 GO:0003677
Phco9g01929 1092 MobiDBLite consensus disorder prediction 258 272 - -
Phco9g01929 1092 PANTHER RNA POLYMERASE III TRANSCRIPTION INITIATION FACTOR COMPLEX SUBUNIT 17 1083 - -
Phco9g01929 1092 SMART WD40_4 865 903 IPR001680 GO:0005515
Phco9g01929 1092 SMART WD40_4 628 678 IPR001680 GO:0005515
Phco9g01929 1092 SMART WD40_4 758 802 IPR001680 GO:0005515
Phco9g01929 1092 SMART WD40_4 701 747 IPR001680 GO:0005515
Phco9g01929 1092 SMART WD40_4 806 845 IPR001680 GO:0005515
Phco9g01929 1092 MobiDBLite consensus disorder prediction 451 474 - -
Phco9g01929 1092 SUPERFAMILY WD40 repeat-like 643 906 IPR036322 GO:0005515
Phco9g01929 1092 MobiDBLite consensus disorder prediction 1009 1041 - -
Phco9g01929 1092 MobiDBLite consensus disorder prediction 233 275 - -
Phco9g01929 1092 MobiDBLite consensus disorder prediction 498 520 - -
Phco9g01929 1092 MobiDBLite consensus disorder prediction 1021 1036 - -
Phco9g01929 1092 MobiDBLite consensus disorder prediction 290 318 - -
Phco9g01929 1092 SMART AT_hook_2 238 250 IPR017956 GO:0003677
Phco9g01929 1092 SMART AT_hook_2 271 283 IPR017956 GO:0003677
Phco9g01929 1092 SMART AT_hook_2 306 318 IPR017956 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01929 Phco-Chr9 44145052 44167138 Dispersed