Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01928 ATGGCTAGGATTAGAGATCGTGGATCATATACTAATGGGGTTGATGGTAGGCTGAGACCTGCAACATTTGTTTGGAAAAGAAATTGTGGTCAAGTTGTTGATGACACTACACCTGCTGTACCTGATGCGCAACAAATACCTAAGGCAAAATTTAGCGAAAAGATGGGAGGGACACAAACGGAGAGAGAAGAGAAGGTGTCTTTGGAACTCGGTGAAGAAATTCTTCAGAGTATGGAAGTAGGAATGGCCTTCAAAGACTATAATGGTAGAATTAGTTCCTTGGACTTTCACAGGGCATCCAGTTATCTAGTTACTGCTAGTGATGATGAATCCATTCGACTGTATGAGGTTACCAGTGGGACATGTTTGAAGACAATTAATAGCAAGAAGTATGGGGTTGACCTGGTTTGCTTCACATCTCATCCTACAACTGTCATATACTCTTCAAAAAATGGTTGGGATGAATCTTTGCGGCTTCTATCGTTACATGATAACAAGTATTTGAGATATTTCAAAGGTCACCATGACAGGGTTGTGTCGCTAAGCTTGTGCTCTCGGAAAGACTGCTTTATATCTGGTTCTTTAGATCGAACTGTTTTACTATGGGATCAAAGGGCTGAAAAGTGCCAGGGACTGTTACGTGTACAAGGAAGGCCTGCTATTTCATATGACGATCAAGGTCTTGTCTTTGCAGTTGCCTTTGGAGGATTCATAAGAATGTTTGATGCTCGCAAATATGAAAAGGGTCCCTTTGAGATATTTTCTGTTGGGGGAGATACTTCTGATGCAAATGTTGTGAAATTTAGTACTGATGGGAGTCTCATGCTTTTAACAACGGCAGATGGGCATATTCATGTACTTGATTCATTTCGTGGCACACTTTTATCCACATATAATGTCACACCTGTCTCATGCAACTCCACATTAGAAGCTTCTTTTAGCCCCGAGGGAATGTTTGTAATATCTGGATCTGGGGATGGAAGCATATATGCATGGAGTGTTCGAAGTGGCAAAGAAGTTGCAAGTTGGAGGAGTGCAACTTCTGATACCGGACCTCCTGTAATAAAATGGGCTCCTGGAAGTCTTATGTTTGCTACTGGATCATCTGAGTTGTCATTCTGGATTCCAGATCTGTCTAAGTTGGGATCTTATGTTGGAAGAAAGTAG 1167 0.4156 MARIRDRGSYTNGVDGRLRPATFVWKRNCGQVVDDTTPAVPDAQQIPKAKFSEKMGGTQTEREEKVSLELGEEILQSMEVGMAFKDYNGRISSLDFHRASSYLVTASDDESIRLYEVTSGTCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSRKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAISYDDQGLVFAVAFGGFIRMFDARKYEKGPFEIFSVGGDTSDANVVKFSTDGSLMLLTTADGHIHVLDSFRGTLLSTYNVTPVSCNSTLEASFSPEGMFVISGSGDGSIYAWSVRSGKEVASWRSATSDTGPPVIKWAPGSLMFATGSSELSFWIPDLSKLGSYVGRK 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01928 388 PRINTS G protein beta WD-40 repeat signature 103 117 IPR020472 -
Phco9g01928 388 PRINTS G protein beta WD-40 repeat signature 190 204 IPR020472 -
Phco9g01928 388 PRINTS G protein beta WD-40 repeat signature 320 334 IPR020472 -
Phco9g01928 388 ProSiteProfiles Trp-Asp (WD) repeats profile. 171 203 IPR001680 GO:0005515
Phco9g01928 388 SMART WD40_4 77 116 IPR001680 GO:0005515
Phco9g01928 388 SMART WD40_4 249 288 IPR001680 GO:0005515
Phco9g01928 388 SMART WD40_4 291 333 IPR001680 GO:0005515
Phco9g01928 388 SMART WD40_4 164 203 IPR001680 GO:0005515
Phco9g01928 388 Gene3D - 249 384 IPR015943 GO:0005515
Phco9g01928 388 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 171 203 - -
Phco9g01928 388 PANTHER WD40 REPEAT PROTEIN SWD2 65 380 IPR037867 -
Phco9g01928 388 FunFam protein ANTHESIS POMOTING FACTOR 1 isoform X1 74 375 - -
Phco9g01928 388 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 84 120 - -
Phco9g01928 388 Gene3D - 39 248 IPR015943 GO:0005515
Phco9g01928 388 ProSiteProfiles Trp-Asp (WD) repeats profile. 312 342 IPR001680 GO:0005515
Phco9g01928 388 ProSiteProfiles Trp-Asp (WD) repeats profile. 84 125 IPR001680 GO:0005515
Phco9g01928 388 Pfam WD domain, G-beta repeat 307 332 IPR001680 GO:0005515
Phco9g01928 388 Pfam WD domain, G-beta repeat 167 203 IPR001680 GO:0005515
Phco9g01928 388 Pfam WD domain, G-beta repeat 89 115 IPR001680 GO:0005515
Phco9g01928 388 SUPERFAMILY WD40 repeat-like 83 374 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01928 Phco-Chr9 44134986 44140302 Dispersed