Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01901 ATGGGTCGTCGGAAAATTCAGATTGCGAAAGTGAAGGACCCCAACACGAGACAAATCACGTTTTCAAAGCGTCGAACAGGTTTGTTCAAGAAAGCGAACGAGTTGTCCATCATGTGTGGTGCAAAGATTGCCATTGTGGTGTTCTCTCCAGGGAACAAACCTTACTCATTTTCCCACCCAGGTGTTCATCTTGTTGCTGCTGAATTTCTTCAGCAAGACCTCACAAACCATCTCCAAAGAGGACCCTCTTTTGATGTTTATAAGAATCACTACTTTAATCTGCAAAATCTTGATCTCATGAGACAGTTGGCTGAGGAAGAAAGTAAACGTGCAATGCTTGATGAAGCTATCGATCATGGCAAAGGAACTCAACTCTCTGAACTTCAAAAACTACTCACTTCTCTTGCTGATATCAATTCAAAAGTGAAGAGTGAGATCGAGGCTGCAGAAACTATGATACTCTTCTCACAGGAGGGAGTAGAATTTCCTGCTGCAACAAGAGAGGAAAATTAG 513 0.423 MGRRKIQIAKVKDPNTRQITFSKRRTGLFKKANELSIMCGAKIAIVVFSPGNKPYSFSHPGVHLVAAEFLQQDLTNHLQRGPSFDVYKNHYFNLQNLDLMRQLAEEESKRAMLDEAIDHGKGTQLSELQKLLTSLADINSKVKSEIEAAETMILFSQEGVEFPAATREEN 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01901 170 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Phco9g01901 170 CDD MADS 2 60 - -
Phco9g01901 170 FunFam Agamous-like MADS-box protein AGL62 13 78 - -
Phco9g01901 170 SUPERFAMILY SRF-like 1 77 IPR036879 GO:0003677|GO:0046983
Phco9g01901 170 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Phco9g01901 170 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Phco9g01901 170 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Phco9g01901 170 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Phco9g01901 170 PANTHER MADS BOX PROTEIN 3 143 - -
Phco9g01901 170 Gene3D - 14 83 IPR036879 GO:0003677|GO:0046983
Phco9g01901 170 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01901 Phco-Chr9 43739136 43739648 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Phco9g01901 SRF-TF 7.4e-24 No_clan