Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco9g01898 | ATGTCCTCGCATCAAGGTTTAAGCTTTCAAAGTCTGTTTTCTTGTTCTATTCCCACAACACTGTACTCATGGATCATTTGCTTCTTTGTAGATTTGGTTAGCTGGTACTTGTTCTTTTTGAGTGGACTGATGGATTTTAATACTGATAAGATGCTGGCCAGTGATCCTGCAAGGAAGTTTTCGTTTAATCGTACAATCAGTAATGGTGATTTGGTTATTGTTTATGAAAGGCATGACAACATGAAGGCTGTTACAGTGTCTGAGGGATCAGTCCTGCAGAACCGATTTGGTGTTTTTAAGCATTCAGATTGGCTTGGAAAGCCATTTGGATCCAAAATATTCAGCAGCAAGGGTGGTTTTGTGTACTTATTGGCTCCTACACCAGAATTGTGGACACTTGTTTTAAGCCACAGGACTCAGATTCTATATATTGCTGATATTAGCTTTGTTGTCATGTACCTGGAGATTGTTCCTGGTTGCTTGGTTCTTGAATCTGGAACTGGAAGTGGATCATTAACTACTTCACTTGCTAGGGCAGTGGCTCCTACTGGACATGTCTATACATTTGATTTCCATGAGCAAAGGGCCGAATCTGCTAGGGATGATTTTGAGAGGACTGGTCTTAGCAGCTTAGTCACTGTGGGAGTCAGGGACATTCAGGGTGAGGGATTTCCAGATGAGTTCACTGGCTCGGCTGACGCGGTATTTTTGGATCTACCTCAACCTTGGCTAGCTATTCCTTCAGCTGCAAAAATGTTAAAACAAGATGGCACATTGTGTTCATTCTCCCCGTGCATTGAACAAGTTCAACGTTCATGTGAAGTGCTTCAAATCAGCTTCACTGATATAAGGACTTTTGAGGTACTCCTCCGCACATACGAAGTCCGAGAAGAGAAACTGGAAAGCACACAGAGGAATGGAGATGACTCCAATGGTTCACTTCCTTGCAAGAGGAGACAGTGTTCAGATGGTGGCAATGTGATCAGTAGTCCTATTTCATCTGTTATGGCTAGACCATGCGGTGAAGCTAGAGGTCACACAGGTTATCTCACATTTGCAAGACTTAGATGTCTCATATGA | 1080 | 0.4278 | MSSHQGLSFQSLFSCSIPTTLYSWIICFFVDLVSWYLFFLSGLMDFNTDKMLASDPARKFSFNRTISNGDLVIVYERHDNMKAVTVSEGSVLQNRFGVFKHSDWLGKPFGSKIFSSKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVVMYLEIVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAESARDDFERTGLSSLVTVGVRDIQGEGFPDEFTGSADAVFLDLPQPWLAIPSAAKMLKQDGTLCSFSPCIEQVQRSCEVLQISFTDIRTFEVLLRTYEVREEKLESTQRNGDDSNGSLPCKRRQCSDGGNVISSPISSVMARPCGEARGHTGYLTFARLRCLI | 359 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco9g01898 | 359 | FunFam | tRNA (adenine(58)-N(1))-methyltransferase | 57 | 127 | - | - | |
| Phco9g01898 | 359 | PIRSF | GCD14 | 60 | 357 | IPR014816 | GO:0016429|GO:0030488|GO:0031515 | |
| Phco9g01898 | 359 | PANTHER | TRNA (ADENINE(58)-N(1))-METHYLTRANSFERASE | 55 | 356 | IPR014816 | GO:0016429|GO:0030488|GO:0031515 | |
| Phco9g01898 | 359 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 65 | 355 | IPR029063 | - | |
| Phco9g01898 | 359 | Gene3D | Vaccinia Virus protein VP39 | 128 | 357 | IPR029063 | - | |
| Phco9g01898 | 359 | CDD | AdoMet_MTases | 162 | 259 | - | - | |
| Phco9g01898 | 359 | ProSiteProfiles | tRNA (adenine(57)-N(1)/adenine(58)-N(1) or adenine(58)-N(1)) (EC 2.1.1.219 or EC 2.1.1.220) family profile. | 69 | 356 | IPR014816 | GO:0016429|GO:0030488|GO:0031515 | |
| Phco9g01898 | 359 | MobiDBLite | consensus disorder prediction | 300 | 319 | - | - | |
| Phco9g01898 | 359 | Gene3D | - | 60 | 127 | - | - | |
| Phco9g01898 | 359 | FunFam | tRNA (adenine(58)-N(1))-methyltransferase | 128 | 357 | - | - | |
| Phco9g01898 | 359 | Pfam | tRNA methyltransferase complex GCD14 subunit | 119 | 354 | IPR014816 | GO:0016429|GO:0030488|GO:0031515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phco9g01898 | Phco-Chr9 | 43650203 | 43652602 | Dispersed |