Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01897 ATGGGATTTTATTCTTACCTCAAACACCAAGTTGATATCATGGTGCAGTTGTCGTTTGCATGCGGTGTAGCATTCTTTGTCTTCTTCATCTGCTTGGTCAACGTTGCACAAGCACAAGCTGCAGAGGCCACCACAGATCCTTCAGAAGCAAGAGTCTTAAATTCAATCTTCAGCAAATGGGGTATATCCGCAAACACAACTTTGTGGAATATAAGTGGTGAAGTATGCAGTGGAAGAGCCATTGATAATATCACAACTGTTGAAGCTTACAACCCATTCATCAAATGTGATTGTTCCTTTGGCAATGGAACTACTTGTCACATCATAGCATTGAGAGTCTATGCACTGAACGTGGTTGGTGAAATTCCAGAAGAGTTATGGAGTCTCACTTATCTCACCAATTTAAATATTGGGCAAAATTACTTGACGGGTTCTCTACTTGCAGCCATTGGAAATCTAACTCGAATGCAATACTTGTCCGTTGGCGTCAATAATTTAGCGGGGGAGCTCCCAAAGGAATTGGGAAATCTTTCACAGTTAAAATCATTGGCTTTTGGGACAAACAAGTTTTCAGGATCTCTTCCATCAGAACTCGGGAAACTGACAAAGTTAGAACAACTGTACTTTGATAGTTCAGGAATCAGTGGTCCAATTCCTTCCACATTTGCAAATCTTACAAATTTGGAGACAATATGGGCTTCAGACATGGAATTCGGAGGCCAAATACCAGACTTCATAGGGAATTGGTCTAAGCTTCGAGTCTTGAGGTTTCAGGGAAATTCTTTTAAAGGCTTAATACCTTCATCATTTTCCAAGTTGACTTCTTTGTCAGAGTTGAGAATCAGTGACATGTCCAACGGGAGCTCCTCACTAGAATTTATAAGGAATATGAAATCTTTAGTTTTTTTAGAACTGAGGAATAACAATATTAATGGTTCAATTCCATCCTTCATTGGAGAGTTTCAAAATTTGACTCAATTGGATTTAAGCTTTAATAACATCTCAGGACACATTCCAGAATCAATTTTCAACTCGAGTTCACTCTCTTACGTGTTTCTTGGAAATAACATACTAAGTGGCACTCTGCCGAGGCAAAAAAGTTCATCTCTTCAAAATATAGATTTGTCATACAATAATCTTTCAAACGACCTTCCCTCTTGGGTAAATGAACCAAATTTACAGTTGAATTTAGTTGCCAACAACTTCACAATAGAAGGTTCAAATATCAGTGGCTTGCCTAGTGGGCTCGGCTGTCTCCAGAAAAATTTTCCTTGCAATAGCGGAGTTGGAAGATATTCTAACTTTGCAATCAAGTGTGGTGGTCCCCAAATTTTATCGACAGATGGAACTGTGTATGAGATGGACAATGCTACACTTGGTCCTGCTACATACTTTGTTACAGAAGCAAAAAGATGGGCTATTAGTAATGTTGGACTTTATACTGGGAACTATCATTCTAACTACAAAAGCCTTGGGATCTCGGAGATCCTCCAAACAGCACGACGCTCTGCTTCATCATTAAGATATTATGGTTTGGGGTTGGAAAATGGCTTTTACAACATCACCCTTTTATTTTCAGAAATAGGTATTTTGAGTGATACTCTCACATGGGAGAGCCTAGGGAGGCGAGTCTTTGATGTCTATATCCAGGGGACACTTGTTCTTAAGGATTTTGACATACTAGAGGAAGCTGGGGGGTCCAAAAATGGTATAATAAAGGAATTTAGGTCTGAAGTTCTCCAAAATTATCTTGAGATCCATCTCTTTTGGGCTGGGAAAGGGACCTGCTGCATACCAAGTCAAGGCACTTATGGGCCCTTGATTCAAGCCATTCGTGCTGTCGCAGATTTCACACCTACAGTCAGTAACGAACCTCCGAACAGCAAAGAGAATAAAACTGATTTCCCAGATATTGTCAACACCGGACCTACGAGCAGTAAAAAGGACAGTACTGGTCTTATTGTTGGAATTGTTGTTGCTGGAGTTATAAGCTTTCTATCAGTTTTTGTGTTTTTATATATCATTTATAGAAGAAAACACCAAAATGATGACGAAGAGCTTCTAGGAATTGATACAAAGCCATACACTTTTAGCTATTCTGAGTTAAAGAACGCTACAAATGACTTCAGGCTCGAAAACAAACTTGGCGAGGGAGGTTTTGGATCTGTTCATAAGGGGACACTAAATGATGGAAGAGCTATTGCTGTGAAACGACTATCAGTAGGATCCAATCAAGGGAAGAGTCAATTTGTGGCTGAGATTGCTACCATATCAGCTGTGCAACATCGTAATCTAGTCAAACTATATGGGTGTTGCATAAAGGGGAGAGAAAAACTTCTTGTTTATGAGTATCTAGCAAATAAGAGTCTTGATCAAGCATTATTCGGAAATCGTTTAACACTTAATTGGTCCACACGCTATGATATTTGCTTGGGTGTTGCTAGAGATTTTGGGTTGGCCAAATTGTATGATGATAAAATGACCCATATGAGCACTCGTGTGGCTGGGACAATTGGATATCTTGCACCGGAGTATGCCATGCGTGGACACCTTACAGAGAAAGCAGATGTGTTTTCCTTTGGTGTTATGGCTCTAGAGTTAGTTAGTGGAAGACCAAATTCTTATTCAAGTATGGGAGAAGAGAAGGTGTATCTTCTTGAATGGGCATGGGAACTTCATGAAAGCAACTGCATAAGTGATCTAGTGGATCCTAGACTGATCGAATTCGATGAGGAAGAAGTAAAACGCATAGTAGGAATAGTGCTTTTATGCACTCAAGCATCACCAATATTACGACCATCAATGTCACGTGTTGTGGCAATGCTTTCAGGAGACATTGAAGTGAGTAGTGTCACTACAAAGCCTGGATACCTAACTGATTGGAATTTTGAGGATGTGACCAGCTTCATGACTAACATAACAAGTTATGAGAATTCACCATCAAGTGCCACCACACTGGATGGAGTTGACCAGTCACCAATAAGTGCTTCTAAACCGATCCTTGTTAAGAATGTTGCAGATAATTAG 3027 0.3987 MGFYSYLKHQVDIMVQLSFACGVAFFVFFICLVNVAQAQAAEATTDPSEARVLNSIFSKWGISANTTLWNISGEVCSGRAIDNITTVEAYNPFIKCDCSFGNGTTCHIIALRVYALNVVGEIPEELWSLTYLTNLNIGQNYLTGSLLAAIGNLTRMQYLSVGVNNLAGELPKELGNLSQLKSLAFGTNKFSGSLPSELGKLTKLEQLYFDSSGISGPIPSTFANLTNLETIWASDMEFGGQIPDFIGNWSKLRVLRFQGNSFKGLIPSSFSKLTSLSELRISDMSNGSSSLEFIRNMKSLVFLELRNNNINGSIPSFIGEFQNLTQLDLSFNNISGHIPESIFNSSSLSYVFLGNNILSGTLPRQKSSSLQNIDLSYNNLSNDLPSWVNEPNLQLNLVANNFTIEGSNISGLPSGLGCLQKNFPCNSGVGRYSNFAIKCGGPQILSTDGTVYEMDNATLGPATYFVTEAKRWAISNVGLYTGNYHSNYKSLGISEILQTARRSASSLRYYGLGLENGFYNITLLFSEIGILSDTLTWESLGRRVFDVYIQGTLVLKDFDILEEAGGSKNGIIKEFRSEVLQNYLEIHLFWAGKGTCCIPSQGTYGPLIQAIRAVADFTPTVSNEPPNSKENKTDFPDIVNTGPTSSKKDSTGLIVGIVVAGVISFLSVFVFLYIIYRRKHQNDDEELLGIDTKPYTFSYSELKNATNDFRLENKLGEGGFGSVHKGTLNDGRAIAVKRLSVGSNQGKSQFVAEIATISAVQHRNLVKLYGCCIKGREKLLVYEYLANKSLDQALFGNRLTLNWSTRYDICLGVARDFGLAKLYDDKMTHMSTRVAGTIGYLAPEYAMRGHLTEKADVFSFGVMALELVSGRPNSYSSMGEEKVYLLEWAWELHESNCISDLVDPRLIEFDEEEVKRIVGIVLLCTQASPILRPSMSRVVAMLSGDIEVSSVTTKPGYLTDWNFEDVTSFMTNITSYENSPSSATTLDGVDQSPISASKPILVKNVADN 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01897 1008 Gene3D - 433 616 - -
Phco9g01897 1008 FunFam Putative LRR receptor-like serine/threonine-protein kinase 287 410 - -
Phco9g01897 1008 ProSitePatterns Protein kinases ATP-binding region signature. 715 737 IPR017441 GO:0005524
Phco9g01897 1008 ProSiteProfiles Protein kinase domain profile. 709 948 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g01897 1008 ProSiteProfiles Leucine-rich repeat profile. 323 345 IPR001611 GO:0005515
Phco9g01897 1008 FunFam Leucine-rich repeat receptor-like protein kinase 678 784 - -
Phco9g01897 1008 Gene3D Phosphorylase Kinase; domain 1 673 784 - -
Phco9g01897 1008 Pfam Malectin domain 434 611 IPR021720 -
Phco9g01897 1008 FunFam Os05g0263100 protein 50 286 - -
Phco9g01897 1008 MobiDBLite consensus disorder prediction 622 643 - -
Phco9g01897 1008 SUPERFAMILY L domain-like 107 414 - -
Phco9g01897 1008 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 28 815 - -
Phco9g01897 1008 Gene3D Ribonuclease Inhibitor 46 286 IPR032675 -
Phco9g01897 1008 Gene3D Ribonuclease Inhibitor 287 424 IPR032675 -
Phco9g01897 1008 SUPERFAMILY Protein kinase-like (PK-like) 692 976 IPR011009 -
Phco9g01897 1008 Pfam Protein tyrosine and serine/threonine kinase 816 941 IPR001245 GO:0004672|GO:0006468
Phco9g01897 1008 Pfam Protein tyrosine and serine/threonine kinase 710 814 IPR001245 GO:0004672|GO:0006468
Phco9g01897 1008 Gene3D Transferase(Phosphotransferase) domain 1 815 957 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01897 Phco-Chr9 43605078 43645367 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Phco9g01897 Malectin 2.2e-36 CL0202