Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01872 ATGAAGATTCAGTGCAACGTGTGCGAAGCTGCGGAGGCCAAGGTCCTGTGTTGCGCTGACGAGGCCGCACTGTGCTTGGAATGCGATGAAAAGGTTCACGCCGCAAACAAGCTCGCCACCAAGCACCAAAGAGTTCCCCTTTCTCTCTCTGCTTCCCACGTGCCAAAGTGCGACATATGCCAGGAAATGGTTGGTTATTTCTTCTGTTTAGAGGATCGGGCTTTGCTATGTAGGAATTGTGATGTATCTGTTCACACTGCTAATGCCTGTGTCTCTGGTCATCAAAGGTTTTTGCTTACTGGTGTGAGAGTAGGCCTTGAAGCTACTGAGTGCGGTGCTTCCTCGTCCTCTGTCAAGTCACAATCTGGGGAGAAAACATCTGATGCTAAATCTTCATCCATCTCCAGAAATGTCTCCTCCCTGCCCCAGCCATCAAATTTCAATGAAGTGTTACCCTCCCAAATGGGAGCATTTGAGGACTTTCCACCAAACAAGGTGTCTTACGGTGGTGGTTATACTGCTGGAAACGTCTCACAATGGCCCATGGAAGAATTTCTCGGGTTAAACGAATTTAGTCAGTATTATAACTATATGGATGGATCATCTAAGGCTGACAGTGGTAAACATGGGGATTCTGATTCTTCAGTTTTGAGGTCTATTGAAGAGGAAATGGATGATGACTCCTTCTTGGGGCGTGTCCCAGATTCATCTTGGACAGTTCCTCAGATCTCTTCCCCTCCGACGGCTTCTGGGTTACACTGCCCGGAAATCCGTCGGTATACATCTGATAATGCTATGTTTGTTCCTGACATATGCTTTTCTGACGTCCGGCGGCAGCCTCACCATGTTCTTCATAACTCTATTCATTCAAAACGGCGGAGGAACCTATAA 891 0.4736 MKIQCNVCEAAEAKVLCCADEAALCLECDEKVHAANKLATKHQRVPLSLSASHVPKCDICQEMVGYFFCLEDRALLCRNCDVSVHTANACVSGHQRFLLTGVRVGLEATECGASSSSVKSQSGEKTSDAKSSSISRNVSSLPQPSNFNEVLPSQMGAFEDFPPNKVSYGGGYTAGNVSQWPMEEFLGLNEFSQYYNYMDGSSKADSGKHGDSDSSVLRSIEEEMDDDSFLGRVPDSSWTVPQISSPPTASGLHCPEIRRYTSDNAMFVPDICFSDVRRQPHHVLHNSIHSKRRRNL 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01872 296 SMART bboxneu5 4 47 IPR000315 GO:0008270
Phco9g01872 296 SMART bboxneu5 52 99 IPR000315 GO:0008270
Phco9g01872 296 CDD Bbox1_BBX-like 5 47 - -
Phco9g01872 296 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 272 - -
Phco9g01872 296 Gene3D Classic Zinc Finger 1 92 - -
Phco9g01872 296 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Phco9g01872 296 Pfam B-box zinc finger 54 95 IPR000315 GO:0008270
Phco9g01872 296 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Phco9g01872 296 FunFam B-box zinc finger protein 22 1 93 - -
Phco9g01872 296 MobiDBLite consensus disorder prediction 115 146 - -
Phco9g01872 296 CDD Bbox1_BBX-like 56 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01872 Phco-Chr9 43314414 43317769 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Phco9g01872 zf-B_box 3e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g01872 9 43314414 43317769 Phco9g01872 9 43314414 43317769 ECH