Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01864 ATGTCTTCTTCTTCTTCCTCCTCCTCCTCCAATGAACTCATCCTCACTAGCTCCCCTGACGGGCCAATCATGGTGTACGACACCGTTAGCCGCACCGCTGTCACGCGGTTCTCCAGTAGCCGATCTCCGTCTCGTGGCCTCACCATAGTGGGCAGGAGATTGCTCGCAGCCTCACACGTATCCTCAGACACGGGTGCAGGCTCCATCAACATCTACAATTGGCATGGTTCTGGTGTGTTTCGTAACTTCCCTGTGCCTGAACCCGTTGCCCCTCTCATTGCTACATCCGATGGAACGTTTCTCTTTGGTGGTGGCATCTCAGGGAGTGTTGTATCTCTTTCAAGTTCTTCTGGGGATGTGATCAGATCAATTGGTGTACACGCGAGTCCAGTTTCTAGTCTTCATCTGAGTGATGATGGGTCACTTCTGATTTCAGGTAGTGAAGATGGGACCATTGCTATCGTCCCTACCTTTAAGATCGTTGTTGGGGGTTCCTTGGAGGAGGAGGAGGAGGAGGATGGGGAAAACTTGATCTTGAACAAATGGAAGGCACATTCTGATTCCGTGACTGCTTTGAAGTCTGTGATGAACACTTTGGTTTCTTGCTCATCAGACTGCACATGCAAGTTTTGGAATCTGGGAGACTGTGGGGTCCTTATGCGGACTGTGGCATTCCCATGCTGCATTTCTGGGGTTGCCTTGGGTTCCACAGAGACAGCGTTTTACGCTGGTGGAGCAGATGGGTTTGTTTATAATGGGAGTATGAAAGTGGTGGGTGAGGCTTGTGAGGTGAGGAAGTGGGCTAGGGTTCATGGTGGGTCAATTGTGTCATTGTGTTTGGTGAATGAAGAGAGGAGTTTGGTGTCTGCTGCAGAAGATGGGAGTGTGTGGATGTGGGATGTTGAGAAAGGAGAAGTCATAATGGTTTTTGGAGATGAGTTGATAACCATTAGTGACATGATTGTGATGAAGGGAAATGGTGGTGGGTTTGGAGATGGAAAGGGAAATAATAATGTTAGAGTTGGGGAAGGTAGTGGTTCCTTCACTTCTTCTAGGTTATGTGATGAGCAGATGCTTAGAACCCTAAATAAAATCACAGAGCTTGAGGAGACGAAGGATGTTGTGTTACAAGACAAGAAAAAGGCCATTGACATGCTGGAATCTGTAATTGAAATGTATGAGAGACTTTTGGAGCTTATCCTTAAGGAAGTTACCAAAGCCATTGAAGAAGAAGAAGGAGAAAATGATGATGGAGAAGACAAAGAAGACAAAGATGAGAAAGATGGGAAAGATGAGAAAGATGAAGAGGAACAGGGAAAAGGTGATAAGAAAGAAGAGTAG 1341 0.4668 MSSSSSSSSSNELILTSSPDGPIMVYDTVSRTAVTRFSSSRSPSRGLTIVGRRLLAASHVSSDTGAGSINIYNWHGSGVFRNFPVPEPVAPLIATSDGTFLFGGGISGSVVSLSSSSGDVIRSIGVHASPVSSLHLSDDGSLLISGSEDGTIAIVPTFKIVVGGSLEEEEEEDGENLILNKWKAHSDSVTALKSVMNTLVSCSSDCTCKFWNLGDCGVLMRTVAFPCCISGVALGSTETAFYAGGADGFVYNGSMKVVGEACEVRKWARVHGGSIVSLCLVNEERSLVSAAEDGSVWMWDVEKGEVIMVFGDELITISDMIVMKGNGGGFGDGKGNNNVRVGEGSGSFTSSRLCDEQMLRTLNKITELEETKDVVLQDKKKAIDMLESVIEMYERLLELILKEVTKAIEEEEGENDDGEDKEDKDEKDGKDEKDEEEQGKGDKKEE 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01864 446 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 268 305 - -
Phco9g01864 446 Gene3D - 2 171 IPR015943 GO:0005515
Phco9g01864 446 Gene3D - 172 326 IPR015943 GO:0005515
Phco9g01864 446 SMART WD40_4 260 300 IPR001680 GO:0005515
Phco9g01864 446 SMART WD40_4 117 156 IPR001680 GO:0005515
Phco9g01864 446 SMART WD40_4 175 212 IPR001680 GO:0005515
Phco9g01864 446 ProSiteProfiles Trp-Asp (WD) repeats profile. 268 309 IPR001680 GO:0005515
Phco9g01864 446 MobiDBLite consensus disorder prediction 408 446 - -
Phco9g01864 446 Coils Coil 376 421 - -
Phco9g01864 446 SUPERFAMILY WD40 repeat-like 8 321 IPR036322 GO:0005515
Phco9g01864 446 MobiDBLite consensus disorder prediction 423 446 - -
Phco9g01864 446 Pfam WD domain, G-beta repeat 120 152 IPR001680 GO:0005515
Phco9g01864 446 Pfam WD domain, G-beta repeat 181 212 IPR001680 GO:0005515
Phco9g01864 446 ProSitePatterns Trp-Asp (WD) repeats signature. 287 301 IPR019775 -
Phco9g01864 446 PANTHER WD-REPEAT PROTEIN 18 11 403 IPR045227 -
Phco9g01864 446 ProSiteProfiles Trp-Asp (WD) repeats profile. 124 154 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01864 Phco-Chr9 43250274 43251614 Dispersed