Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01773 ATGCTTCCAGGAGAGTATTTGGAAGACAGTTGTGGAAGAGAGCTTCGGAGGAAATCTTTGGAGGTGGAGGTGGAGGTGGGTGCCGCTCTACTGTGGGAGGCAATGACAAACTTTCTATCTGTGTGCTTCGTTTTTGGGTTTTCTTTGATCATGGGTCGCCCACCCAGTAATGGAGGCCCAGCCTTTCGCTTCACTCCGGCTGAGGTAGGAGAAATGGAAGTTATTCTTCAAGAACATGAGAATGCAATGCCAGCACGTGAAATTCTTACAGCTCTTGCTGAGAAGTTCAGTGAATCACCAGATCGTAAAGGCAGGATTACAGTGCAAATGAAACAAGTTTGGAATTGGTTTCAAAATAAGCGGTATGCAATAAGAGCAAAGTCAAGTAAGACTCCTGGAAAGTTAAATATTACACCTATGCCTCGGGATGATGCAACCCCGGCAAGAACAGTGCCTCAGCAACCAGCAGCTGCTCCAATTCCTGCTGCTTCTGTTACAGCAGCAGTAAAAGCAACTCCAGAAAATCCAGTTATGGAATTCGAAGCTAAATCTGGAAGGGATGGAGCATGGTATGATGTTTCTACCTTTCTATCACACAGATATTTGGAGACCAATGATCCGGAAGTGCTGGTACGATTTGCTGGTTTTGGGCCTGAGGAAGATGAGTGGATTAACATTCGAAGGCATGTCAGACCACGCTCTTTGCCGTGTGAATCATCAGAATGTGTTGTAGTAATCCCGGGTGATCTCATACTTTGTTTTCAGGAAGGTAAGGAGCAAGCCCTATATTTTGATGCCCATGTACTTGATGCTCAAAGACGGAGGCATGATGTAAGAGGCTGTCGTTGTAGATTTTTGGTTCGCTATGATCATGATCAATCAGAGGAAATCGTGCCGCTTAGGAAGATTTGCCGCAGGCCCGAAACTGATTACCGGTTACAGCAACTTCATGCTGTGAATGAGGTAGCACCTGTGGATCAGCAGAAAACTGGGATGGATCCATCAGTACCAAAGCAGCTGATTGCAGCAAGCATTCATATGGAGATTCCTGTTATGCAGACAAATGTTCCTCAAACTCCACAATGTATGGATATGGATGTAGATCAAAAGAAAGCTGAAACAAATACTGATGTTCCAGCAGGAAACTCTACCACCACCCCAGGGAATACCCCATTCACTAGTATCATTACTACAAGCAATGTTCCTCAAGTCACTAGTCAGACTCAGGACATGGTTGAATGA 1242 0.4509 MLPGEYLEDSCGRELRRKSLEVEVEVGAALLWEAMTNFLSVCFVFGFSLIMGRPPSNGGPAFRFTPAEVGEMEVILQEHENAMPAREILTALAEKFSESPDRKGRITVQMKQVWNWFQNKRYAIRAKSSKTPGKLNITPMPRDDATPARTVPQQPAAAPIPAASVTAAVKATPENPVMEFEAKSGRDGAWYDVSTFLSHRYLETNDPEVLVRFAGFGPEEDEWINIRRHVRPRSLPCESSECVVVIPGDLILCFQEGKEQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSEEIVPLRKICRRPETDYRLQQLHAVNEVAPVDQQKTGMDPSVPKQLIAASIHMEIPVMQTNVPQTPQCMDMDVDQKKAETNTDVPAGNSTTTPGNTPFTSIITTSNVPQVTSQTQDMVE 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01773 413 Pfam SAWADEE domain 178 304 IPR032001 GO:0003682
Phco9g01773 413 SMART HOX_1 57 131 IPR001356 GO:0003677
Phco9g01773 413 Gene3D - 60 134 - -
Phco9g01773 413 PANTHER PROTEIN SAWADEE HOMEODOMAIN HOMOLOG 2 51 378 IPR039276 -
Phco9g01773 413 ProSiteProfiles 'Homeobox' domain profile. 63 127 IPR001356 GO:0003677
Phco9g01773 413 MobiDBLite consensus disorder prediction 371 413 - -
Phco9g01773 413 CDD homeodomain 63 125 IPR001356 GO:0003677
Phco9g01773 413 MobiDBLite consensus disorder prediction 375 413 - -
Phco9g01773 413 SUPERFAMILY Homeodomain-like 54 126 IPR009057 -
Phco9g01773 413 Gene3D - 237 309 - -
Phco9g01773 413 Gene3D - 176 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01773 Phco-Chr9 41662001 41686375 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g01773 9 41662001 41686375 Phco9g01773 9 41662001 41686375 ECH