Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco9g01750 | ATGACTATCGAACCCTTGGATTTGCTTCGCTCCAATCTCGCTCGGGTTCGGATCCCCGAACCGACGAATCGCATCTACAAGCACGAATGTTGCGTTTCCTTCGACTCTCCGAGGTCGGAAGGTGGTTTGTTCATCGACATGTGCTCTTTTCTTGCTTTTGGGAAGGATTTTGTTGGTTGGAATTACGAGAAGACTGGCAATCCTGTGTATTTGCATTTAAAGCAGACTAAGAAGTTAGTTCCAGAAGACAGGCCTTCTAAGAAACCTACCCTCTTGGCTATTGGTATTGACGGGGGATTTGATAATAATGAGCCCGAGTATGAGGAAACTCTTAGTGTAGTTATATTACCTGAGTATGTTTCTCTTCCATTCCCTTCTGTGGAATTGCCGGAGAAGGTAAGGTTGGCAGTTGATGCAATCTTACTAGCTGAGGGTGCTGAACGAAAGGAGGAACTTGCAGCTTGGACTGCGGATAAGAAACATGTTAGTTCCTATGCAATGAATATACAACAGATTGACAATGGTGTTGTTATTCCGCCATGTGGGTGGAAATGTGCTAAATGTGACAAGACAGACAATCTTTGGCTAAATTTGAGTGATGGAATGATACTTTGTGGGAGGAAAAACTGGGATGGAACTGGAGGAAACAACCATGCTGTTGAGCATTATCGGGAGACAGGCTACCCTCTTGCTGTAAAGCTAGGGACTGTCACTGCTGATTTGGAAGCAGCAGATGTTTTCTCCTATCCAGAGGATGAAAGTGTCTTGGATCCACAACTAGCCCAACATCTGGCATTTTTTGGCATTGACTTTTCATCGCTACAAAAGACTGAAATGACAACTGCTGAAAGAGAACTTGATCAAAATACTAATTTTGATTGGAATCGGATACAAGAAAGTGGACAAGATGTATATCCAATTTTTGGACCAGGATATACAGGATTGGTCAATATTGGCAACAGTTGTTACATGGCAGCAAATATGCAAGTTGTATTTTCAACAAGATCCTTCATATCACGGTATTACTTGAGCCAAAGTCTAAAGAAGGCATTTGAGATGTCTCCTGCTGATCCAACTGTAGACCTAAATATGCAGCTGACAAAATTGGCTCATGGCTTACTTTCTGGCAAATATTCTGTTCCGGCATTTGAAGATGATGAAAAAGAAAAGATTGTAACTTCAACTACAACTGCTAAACAAGAAGGGATACGTCCACGCATGTTTAAATCTGTAATAGCTGCCAGTCATCCTGAATTTTCATCTACGAGGCAACAGGATGCTTTAGAATTTTTCCTACACTTTCTTGATCAAGTTGAGCGAGCTAATGCTGGGAAAACTGAACTGGATCCATCGAGGAGTTTCAAATTTGGTATTGAAGATAGAATTTTATGTTCGTCTGGAAAGGTTACTTATAATAGAAGGAATGATTACATTCTTTCTCTCAATATCCCGTTACATCAAGCGACTAACAAAGAAGAACTAGAATCCTTTCACAAACTGAAACAAGAGAAACTTGCAGAAGGAAAGGAAATAAATGCGGATGAGATTGTGCGTCCGAGGGTGCCTTTAGAAACGTGTCTTGCAAACTTCTCTGCTCCTGAGGAGATACATGATTTTTACAGTACTGCTTTGAAGACAAAGACTACAGCACTGAAGACTGCAGGTTTGACTTCATTTCCTGATTATCTGGTATTACACATGCGGAGATTTGTTATGGAGGCAGGATGGGTACCCAAAAAGCTTGATGTGTATATTGATGTTCCTGATATCATAGATATCAGTCATATGCGAAGCAAAGGTCACCAGCCCGGGGAAGAGCTGTTACCTGATGGCGTTCCTGATGAGGAAGATTCAAACAAAATGTGGGCCAATGAAGAAATTGTTGCCCAGCTGGTTTCTATGGGTTTTAATCATCTCCATTGTCAGAAAGCTGCCATAAATACGTCAAATGTTGGAGTAGAAGAGGCAATGAATTGGTTGCTATCTCACATGGATGATCCAGACATTGACCTTCCTATTTCCAAAGGTCATGGCTCTGAAACTTCGACAATTGTAGACCAATCAAAAGTTGATACTCTAATTTCATTTGGATTTCAAGAAGAAATTGCTAGAAAGGCTCTGGACGCATCAGGCGGTGACATTGAGAAAGCGACAGATTGGATATTTAACAACCCTAATGCATCAGTCTCCAGTATGGATACTACCCCTTCAAATGCTGCGTCCACTTCCGATGATGTTAACCTACCTGATGGAGGAGGGAAGTATCGACTTATTGGGATTGTAAGCCACAGCGGAACCTCTACGCTTTGTGGTCACTATGTTGCTCACGTTTTAAAAGATGGTAGATGGGTAATTTTCAACGACAACAAGGTTGGGGCTTCCATTAATCCTCCAAAGGAAATGGGCTATCTTTATTTCTTCGAGAGGTTTTAA | 2433 | 0.4147 | MTIEPLDLLRSNLARVRIPEPTNRIYKHECCVSFDSPRSEGGLFIDMCSFLAFGKDFVGWNYEKTGNPVYLHLKQTKKLVPEDRPSKKPTLLAIGIDGGFDNNEPEYEETLSVVILPEYVSLPFPSVELPEKVRLAVDAILLAEGAERKEELAAWTADKKHVSSYAMNIQQIDNGVVIPPCGWKCAKCDKTDNLWLNLSDGMILCGRKNWDGTGGNNHAVEHYRETGYPLAVKLGTVTADLEAADVFSYPEDESVLDPQLAQHLAFFGIDFSSLQKTEMTTAERELDQNTNFDWNRIQESGQDVYPIFGPGYTGLVNIGNSCYMAANMQVVFSTRSFISRYYLSQSLKKAFEMSPADPTVDLNMQLTKLAHGLLSGKYSVPAFEDDEKEKIVTSTTTAKQEGIRPRMFKSVIAASHPEFSSTRQQDALEFFLHFLDQVERANAGKTELDPSRSFKFGIEDRILCSSGKVTYNRRNDYILSLNIPLHQATNKEELESFHKLKQEKLAEGKEINADEIVRPRVPLETCLANFSAPEEIHDFYSTALKTKTTALKTAGLTSFPDYLVLHMRRFVMEAGWVPKKLDVYIDVPDIIDISHMRSKGHQPGEELLPDGVPDEEDSNKMWANEEIVAQLVSMGFNHLHCQKAAINTSNVGVEEAMNWLLSHMDDPDIDLPISKGHGSETSTIVDQSKVDTLISFGFQEEIARKALDASGGDIEKATDWIFNNPNASVSSMDTTPSNAASTSDDVNLPDGGGKYRLIGIVSHSGTSTLCGHYVAHVLKDGRWVIFNDNKVGASINPPKEMGYLYFFERF | 810 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco9g01750 | 810 | ProSiteProfiles | Ubiquitin-associated domain (UBA) profile. | 622 | 663 | IPR015940 | - | |
| Phco9g01750 | 810 | CDD | UBA2_atUBP14 | 688 | 725 | - | - | |
| Phco9g01750 | 810 | SUPERFAMILY | RING/U-box | 163 | 271 | - | - | |
| Phco9g01750 | 810 | SMART | uba_6 | 686 | 723 | IPR015940 | - | |
| Phco9g01750 | 810 | SMART | uba_6 | 624 | 662 | IPR015940 | - | |
| Phco9g01750 | 810 | Gene3D | - | 608 | 678 | - | - | |
| Phco9g01750 | 810 | ProSitePatterns | Ubiquitin specific protease (USP) domain signature 2. | 755 | 773 | IPR018200 | GO:0004843|GO:0006511 | |
| Phco9g01750 | 810 | Gene3D | Cysteine proteinases | 306 | 810 | - | - | |
| Phco9g01750 | 810 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 149 | 258 | IPR013083 | - | |
| Phco9g01750 | 810 | Gene3D | - | 679 | 741 | - | - | |
| Phco9g01750 | 810 | FunFam | Ubiquitin carboxyl-terminal hydrolase | 149 | 258 | - | - | |
| Phco9g01750 | 810 | ProSitePatterns | Ubiquitin specific protease (USP) domain signature 1. | 314 | 329 | IPR018200 | GO:0004843|GO:0006511 | |
| Phco9g01750 | 810 | ProSiteProfiles | Ubiquitin specific protease (USP) domain profile. | 313 | 810 | IPR028889 | - | |
| Phco9g01750 | 810 | SMART | Zf_UBP_1 | 184 | 239 | IPR001607 | GO:0008270 | |
| Phco9g01750 | 810 | Pfam | Variant UBP zinc finger | 16 | 78 | IPR041432 | - | |
| Phco9g01750 | 810 | Pfam | Ubiquitin carboxyl-terminal hydrolase | 313 | 807 | IPR001394 | GO:0004843|GO:0016579 | |
| Phco9g01750 | 810 | PIRSF | UBP | 8 | 810 | IPR016652 | GO:0004843|GO:0016579 | |
| Phco9g01750 | 810 | FunFam | Ubiquitin carboxyl-terminal hydrolase | 306 | 655 | - | - | |
| Phco9g01750 | 810 | ProSiteProfiles | Ubiquitin-associated domain (UBA) profile. | 684 | 724 | IPR015940 | - | |
| Phco9g01750 | 810 | Pfam | Zn-finger in ubiquitin-hydrolases and other protein | 185 | 259 | IPR001607 | GO:0008270 | |
| Phco9g01750 | 810 | SUPERFAMILY | Cysteine proteinases | 309 | 809 | IPR038765 | - | |
| Phco9g01750 | 810 | CDD | Peptidase_C19B | 314 | 808 | - | - | |
| Phco9g01750 | 810 | SUPERFAMILY | UBA-like | 680 | 727 | IPR009060 | GO:0005515 | |
| Phco9g01750 | 810 | ProSiteProfiles | Zinc finger UBP-type profile. | 161 | 271 | IPR001607 | GO:0008270 | |
| Phco9g01750 | 810 | CDD | UBA1_atUBP14 | 624 | 668 | - | - | |
| Phco9g01750 | 810 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 3 | 110 | IPR013083 | - | |
| Phco9g01750 | 810 | FunFam | Ubiquitin carboxyl-terminal hydrolase | 6 | 103 | - | - | |
| Phco9g01750 | 810 | FunFam | Ubiquitin carboxyl-terminal hydrolase | 622 | 663 | - | - | |
| Phco9g01750 | 810 | Pfam | UBA/TS-N domain | 686 | 721 | IPR015940 | - | |
| Phco9g01750 | 810 | Pfam | UBA/TS-N domain | 624 | 660 | IPR015940 | - | |
| Phco9g01750 | 810 | PANTHER | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE | 137 | 809 | - | - | |
| Phco9g01750 | 810 | FunFam | Ubiquitin carboxyl-terminal hydrolase | 664 | 729 | - | - |