Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00714 ATGACCAAAGGCCGCAAACTAAACAAAATCTCAATTCTCTCTCACAGTATTGGTTTTGAATTGAACTTTGTCACCTTGATGGATCCACGTTTCAAGTCCAATTTCATCAACGGTTTTAAACCTAATCAAGTGCCCAACACGGTTGTTGTAGAGGATCAGTTCCTTGTCCCTGTTAATGGGATGATGAGATCCTTTGAGTTTGGATTCAGGGATAACCCATTAATTCTTCCACCTGATCCAAACGTTGCTCACAACCATGTTTCCTTTGCCACCGATGAGGAGTCTCCATTGGATGAGATTGATTTTTCTGCTACTGTTCTACGCTACATAAACCAAATGCTTATGGAAGAGGACTTGGAGGAAAAGTCGTGTATGTTTCATGATTCCTTGGCTCTCCAAGCTGCTGAGAAATCATTCTATGAGGTCATTGGTGAGACACACCCTTCTTCAATAAAAACCTATCGCAACGTGGACAGCCCTGAGGATAGTAGTTTCAGTGATTATGGCAGCGGTGGTACAACCAGTAGCGCTGGTAACTCGATTGAGTCCCATGGGAATAACGTTGATCTTACTGACTATAAGCCTTCCATATTACAAACCACTTTCCCCACTGACTTTGTTTTCCAGGCCAGTTCAATCCATTCTTATATGAACACCACAAGCGACTTCGGTGTTACCGATAGTGGATTCTTGGCAAGTTCCAGAGAAGCTGGATTTTTAGATCCAACCTTGTTTAGCAAGAGTGAGTCTGTACTGCAATTTGAAAGGGGTGTGGAGGAAGCCAATAAGTTCCTACCTAAAGGGAATCCTTTGGTTATTGACTTGGATAACCCCTCTTTTAGGAAGGTTCCTCCTCTACAGGAGGAAACTAAGGCAGAGAGAGATGAAATTTGTGCAGAGTCAAGGGGAAGGAAGAATCACGTGCGGGAAGATGAAGAAGCAGATTTGCATGATGGGAGAAGCAACAAGCAGTCTGCTGTGTACATTGATGAAAGTGAGATATCAGAATTGCTTGACAAGGTTCTGCTGGGCGCTAGATGCAGAAATGAGCCAGCTCCTTTGTGTATTTGTTACGCAGACCTTCCTAATGGAGCATCCTCTTGTGCACAGAAGAAATTAGAAGAAACAAACAAGTCTGGTGGTGGGAAGAGCCGTGTTAAGAAACAGGGCAACAAAAAAGAAGTTGTGGATCTGAGGACATTGTTGATTCTATGTGCACAAGCTGTTTCTTCTGATGATCGTGTAACTGCTAATGAATTACTTAAGCAGATAAGGCAACATACTTCTCCGCTGGGTGATGGGACTCAGAGGCTGGCCCATTGCTTTGCAAATGCCCTTGAAGCACGCTTGGCAGGGACAGGCACTCAGATTTATACTGCTTTATCATACAAAAGAACCTCTGCAGCAGACATGGTGAAAGCTTACCAAATGTATATTTCGGCCTGTCCATTCAAGAAGCTATCAATAATATTTGCAAACCATACAATTTTGCAGCTAGCCATGGAAGTTGAATCTCTTCATATTATAGACTTTGGCATCCGTTATGGCTTCCAGTGGCCAGCTCTTATATATCGTCTATCAAAACGACTTGGTGGGCCTCCCAAGCTGCGGATTACCGGGATAGAACTCCCACAACCTGGTTTCAGGCCAGCAGAGAGAGTCCAGCAGACGGGGCTTCGCCTTGCAAGATATTGTGATCGCTTTAAAGTTCCATTCGAGTTCAATGCCATTGCACAGAAATGGGAAACCATCAAAATTGAGGACTTGAAGATAAAGGAAAATGAACTTCTTGCAGTGAATTCTATGTTTAGATTTCAAAATCTACTTGATGAGACAATTGTGTTGAATAGTCCCCGGGATGCTGTTTTAAGTTTAATAAGAAAGGCAAATCCCACTATCTTTATACATGGTACTGTCAATGGGAGCTACAATGCTCCATTCTTTGTAACACGGTTCCGGGAGGCCCTTTTCCATTATTCTACTTTGTTTGATGTGCTTGATACTAATGTCAGTCGTGAAGATCCAATGAGATTGATGTTTGAGAAAGAGTTCTTTGGGCGGCGGGTAATGAATGCTTTAGCTTGTGAGGGTTGTGAGAGGGTTGAGAGGCCCGAGACTTACAAGCAATGGCAGGTTAGAAACATGAGAGCTGGATTTAGGCAACTTCCCTTGGATAAACATCTCATCAACAAATTAAGATTCAAGTTGAAAGATGTGTACCACAGTGATTTCATGCTTCTTGAAGATGCCAACTTCATGCTGCAAGGTTGGAAGGGCCGAGTAGTTTATGCTTCCTCTTGTTGGGTGCCTGCATAG 2316 0.4313 MTKGRKLNKISILSHSIGFELNFVTLMDPRFKSNFINGFKPNQVPNTVVVEDQFLVPVNGMMRSFEFGFRDNPLILPPDPNVAHNHVSFATDEESPLDEIDFSATVLRYINQMLMEEDLEEKSCMFHDSLALQAAEKSFYEVIGETHPSSIKTYRNVDSPEDSSFSDYGSGGTTSSAGNSIESHGNNVDLTDYKPSILQTTFPTDFVFQASSIHSYMNTTSDFGVTDSGFLASSREAGFLDPTLFSKSESVLQFERGVEEANKFLPKGNPLVIDLDNPSFRKVPPLQEETKAERDEICAESRGRKNHVREDEEADLHDGRSNKQSAVYIDESEISELLDKVLLGARCRNEPAPLCICYADLPNGASSCAQKKLEETNKSGGGKSRVKKQGNKKEVVDLRTLLILCAQAVSSDDRVTANELLKQIRQHTSPLGDGTQRLAHCFANALEARLAGTGTQIYTALSYKRTSAADMVKAYQMYISACPFKKLSIIFANHTILQLAMEVESLHIIDFGIRYGFQWPALIYRLSKRLGGPPKLRITGIELPQPGFRPAERVQQTGLRLARYCDRFKVPFEFNAIAQKWETIKIEDLKIKENELLAVNSMFRFQNLLDETIVLNSPRDAVLSLIRKANPTIFIHGTVNGSYNAPFFVTRFREALFHYSTLFDVLDTNVSREDPMRLMFEKEFFGRRVMNALACEGCERVERPETYKQWQVRNMRAGFRQLPLDKHLINKLRFKLKDVYHSDFMLLEDANFMLQGWKGRVVYASSCWVPA 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00714 771 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 333 762 IPR005202 -
Phco9g00714 771 MobiDBLite consensus disorder prediction 286 320 - -
Phco9g00714 771 ProSiteProfiles GRAS family profile. 389 769 IPR005202 -
Phco9g00714 771 MobiDBLite consensus disorder prediction 286 322 - -
Phco9g00714 771 MobiDBLite consensus disorder prediction 153 182 - -
Phco9g00714 771 Pfam GRAS domain family 398 768 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00714 Phco-Chr9 5273378 5276200 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Phco9g00714 GRAS 2.8e-112 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g00714 9 5273378 5276200 Phco9g00714 9 5273378 5276200 ECH
Phco2g02639 2 56112708 56114501 Phco9g00714 9 5273378 5276200 ECH
Phco10g01647 10 39144665 39145573 Phco9g00714 9 5273378 5276200 PCT