Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00472 ATGAATCGGACTCTTATCATCTTCGCTGTTGTGTTCTCCGTCGTCGTTTTTGTGGCGGCGGCCTCGTCGGATGGCGGCGAGGACCCGATGATCCGCCAGGTGGTGGACGGCGTCCGGCTCGGAGCAGAAGAGCACTTTTTGGAGTTCAAGAGCAGGTTCGGGAAGGCGTACGCCACCCAGGAGGAGCACGATTACAGATTCACGGTGTTCAAGGCTAACTTGCGCCGCGCTCGGCGCCACCAGAGCCTGGATCCTTCAGCGGTTCACGGCGTGACGCGGTTCTCCGACCTTACGCCGTCGGAGTTCCGAAATAAGGTTTTGGGCCTGAGAGGTGTGAGGTTGCCCTCCGATGCGAATAAGGCTCCCATTCTCCCCACTGATGATATTCCGAGTGATTTTGATTGGAGAGATCACGGTGCAGTTACCCCTGTCAAGAATCAGGGTTCATGCGGTTCGTGTTGGAGCTTCAGCACTACTGGGGCTCTCGAAGGGGCTCACTTTCTGGCAACAGGGGAACTTGTCAGTCTTAGTGAACAGCAGCTTGTTGATTGTGATCACGAGTGTGATCCAGATGAACAAGGTTCTTGCGACTCTGGGTGCAATGGTGGATTGATGAATAGTGCTTTTGAGTACATCCTAAAATCTGGTGGGGTCATGCGCGAGGAAGACTATCCTTATTCCGGTACTGATCGAGGGACCTGTAATTTTGACAGAGCAAAGATTGCAGCATCAGTGGCAAACTTCAGTGTCATCTCACTTGATGAAGACCAGATTGCTGCAAATCTTGTGAAAAATGGCCCTCTTGCAGTGGCCATCAATGCAGTATTTATGCAGACATACATGCATGGAGTATCATGCCCCTACATATGCTCAAGAAGGCTGGATCATGGAGTTTTACTGGTGGGATATGGATCTGGTGCCTATGCACCCATTCGGATGAAGGAGAAGCCCTATTGGATCATTAAAAACTCATGGGGAGAGAATTGGGGAGAAAATGGATACTACAAGATTTGTCGGGGGCGAAATATCTGTGGAGTAGATTCCATGGTTTCAACTGTGGCTGCAGTTCATACAACTACTCATTAG 1086 0.5074 MNRTLIIFAVVFSVVVFVAAASSDGGEDPMIRQVVDGVRLGAEEHFLEFKSRFGKAYATQEEHDYRFTVFKANLRRARRHQSLDPSAVHGVTRFSDLTPSEFRNKVLGLRGVRLPSDANKAPILPTDDIPSDFDWRDHGAVTPVKNQGSCGSCWSFSTTGALEGAHFLATGELVSLSEQQLVDCDHECDPDEQGSCDSGCNGGLMNSAFEYILKSGGVMREEDYPYSGTDRGTCNFDRAKIAASVANFSVISLDEDQIAANLVKNGPLAVAINAVFMQTYMHGVSCPYICSRRLDHGVLLVGYGSGAYAPIRMKEKPYWIIKNSWGENWGENGYYKICRGRNICGVDSMVSTVAAVHTTTH 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00472 361 PRINTS Papain cysteine protease (C1) family signature 318 324 IPR000668 GO:0006508|GO:0008234
Phco9g00472 361 PRINTS Papain cysteine protease (C1) family signature 147 162 IPR000668 GO:0006508|GO:0008234
Phco9g00472 361 PRINTS Papain cysteine protease (C1) family signature 296 306 IPR000668 GO:0006508|GO:0008234
Phco9g00472 361 SMART Inhibitor_I29_2 46 102 IPR013201 -
Phco9g00472 361 SMART pept_c1 129 354 IPR000668 GO:0006508|GO:0008234
Phco9g00472 361 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 147 158 IPR000169 -
Phco9g00472 361 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 294 304 IPR025660 -
Phco9g00472 361 Gene3D Cysteine proteinases 28 354 - -
Phco9g00472 361 FunFam Cysteine protease RD19A 29 354 - -
Phco9g00472 361 CDD Peptidase_C1A 130 353 IPR039417 -
Phco9g00472 361 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 44 347 IPR013128 GO:0008234
Phco9g00472 361 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 318 337 IPR025661 -
Phco9g00472 361 SUPERFAMILY Cysteine proteinases 44 353 IPR038765 -
Phco9g00472 361 Pfam Papain family cysteine protease 129 352 IPR000668 GO:0006508|GO:0008234
Phco9g00472 361 Pfam Cathepsin propeptide inhibitor domain (I29) 46 102 IPR013201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00472 Phco-Chr9 3452525 3454704 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g00472 9 3452525 3454704 Phco9g00472 9 3452525 3454704 ECH
Phco7g00482 7 3519171 3521770 Phco9g00472 9 3452525 3454704 ECH
Phco2g00293 2 2367727 2371676 Phco9g00472 9 3452525 3454704 ECH